* installing *source* package ‘XYomics’ ...
** this is package ‘XYomics’ version ‘0.1.4’
** package ‘XYomics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/XYomics/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c PCSF.cpp -o PCSF.o
PCSF.cpp: In function ‘std::vector<long unsigned int> constructG(std::vector<int>&, int&)’:
PCSF.cpp:413:10: warning: variable ‘total1’ set but not used [-Wunused-but-set-variable=]
  413 |   double total1=0;
      |          ^~~~~~
PCSF.cpp: In function ‘double cut(int&, std::vector<long unsigned int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<double>&, std::map<std::__cxx11::basic_string<char>, double>&)’:
PCSF.cpp:518:7: warning: variable ‘uncovered_nodes’ set but not used [-Wunused-but-set-variable=]
  518 |   int uncovered_nodes = 0;
      |       ^~~~~~~~~~~~~~~
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o XYomics.so PCSF.o RcppExports.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/XYomics/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/XYomics/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/XYomics/src'
installing to /data/localhost/ripley/R/packages/tests-devel/XYomics.Rcheck/00LOCK-XYomics/00new/XYomics/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XYomics)