* installing *source* package ‘WebGestaltR’ ...
** this is package ‘WebGestaltR’ version ‘1.0.1’
** package ‘WebGestaltR’ successfully unpacked and MD5 sums checked
** using staged installation
*** Checking if cargo is installed
*** Checking if cargo is newer than the required version
*** cargo is ok
*** linker supports --wrap; excluding libc exit/abort from the symbol table
** libs
using C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/WebGestaltR/src'
rm -Rf WebGestaltR.so ./rust/target/release/libWebGestaltR.a entrypoint.o wrapstubs.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entrypoint.c -o entrypoint.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c wrapstubs.c -o wrapstubs.o
rustc 1.97.1 (8bab26f4f 2026-07-14) (Fedora 1.97.1-1.fc44)
if [ "yes" = "yes" ]; then \
/usr/sbin/gtar --extract --xz -f ./rust/vendor.tar.xz -C ./rust && \
mkdir -p ./.cargo && \
cp ./config.toml ./.cargo/config.toml; \
fi
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "" != "true" ]; then \
export CARGO_HOME=/data/localhost/ripley/R/packages/tests-devel/WebGestaltR/src/.cargo; \
fi && \
export CARGO_HOME="/data/localhost/ripley/R/packages/tests-devel/WebGestaltR/src/.cargo" && export PATH="/data/localhost/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/localhost/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/data/localhost/ripley/.composer/vendor/bin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/localhost/ripley/.cargo/bin" &&\
cargo build --lib --jobs 2 --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target --offline
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling autocfg v1.5.0
Compiling proc-macro2 v1.0.103
Compiling quote v1.0.42
Compiling unicode-ident v1.0.22
Compiling libm v0.2.15
Compiling num-traits v0.2.19
Compiling libc v0.2.178
Compiling zerocopy v0.8.31
Compiling cfg-if v1.0.4
Compiling getrandom v0.2.16
Compiling crossbeam-utils v0.8.21
Compiling paste v1.0.15
Compiling ppv-lite86 v0.2.21
Compiling rand_core v0.6.4
Compiling syn v2.0.111
Compiling matrixmultiply v0.3.10
Compiling bytemuck v1.24.0
Compiling serde_core v1.0.228
Compiling syn v1.0.109
Compiling safe_arch v0.7.4
Compiling rand_chacha v0.3.1
Compiling crossbeam-epoch v0.9.18
Compiling num-complex v0.4.6
Compiling num-integer v0.1.46
Compiling rawpointer v0.2.1
Compiling typenum v1.19.0
Compiling rayon-core v1.13.0
Compiling crossbeam-deque v0.8.6
Compiling rand v0.8.5
Compiling wide v0.7.33
Compiling approx v0.5.1
Compiling version_check v0.9.5
Compiling memchr v2.7.6
Compiling extendr-ffi v0.9.0
Compiling simba v0.6.0
Compiling ahash v0.8.11
Compiling rand_distr v0.4.3
Compiling num-rational v0.4.2
Compiling once_cell v1.21.3
Compiling ryu v1.0.20
Compiling itoa v1.0.15
Compiling serde_json v1.0.145
Compiling either v1.15.0
Compiling serde v1.0.228
Compiling rayon v1.11.0
Compiling csv-core v0.1.13
Compiling serde_derive v1.0.228
Compiling zerocopy v0.7.35
Compiling extendr-api v0.9.0
Compiling lazy_static v1.5.0
Compiling extendr-macros v0.9.0
Compiling csv v1.4.0
Compiling readonly v0.2.13
Compiling nalgebra-macros v0.1.0
Compiling ndarray v0.15.6
Compiling nalgebra v0.29.0
Compiling statrs v0.16.1
Compiling webgestalt_lib v0.3.2 (https://github.com/bzhanglab/webgestalt_rust.git?branch=master#6f5f8fac)
Compiling WebGestaltR v0.1.0 (/data/localhost/ripley/R/packages/tests-devel/WebGestaltR/src/rust)
Finished `release` profile [optimized] target(s) in 56.60s
if [ "" != "true" ]; then \
rm -Rf /data/localhost/ripley/R/packages/tests-devel/WebGestaltR/src/.cargo && \
rm -Rf ./rust/target/release/build; \
fi
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o WebGestaltR.so entrypoint.o wrapstubs.o -L./rust/target/release -lWebGestaltR -Wl,--wrap=exit -Wl,--wrap=_exit -Wl,--wrap=abort
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/WebGestaltR/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/WebGestaltR/src'
/usr/sbin/nm: apple_versioning.c.o: no symbols
/usr/sbin/nm: os_version_check.c.o: no symbols
/usr/sbin/nm: trampoline_setup.c.o: no symbols
/usr/sbin/nm: truncxfbf2.c.o: no symbols
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/WebGestaltR/src'
installing to /data/localhost/ripley/R/packages/tests-devel/WebGestaltR.Rcheck/00LOCK-WebGestaltR/00new/WebGestaltR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (WebGestaltR)