* installing *source* package ‘WSGeometry’ ...
** package ‘WSGeometry’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/WSGeometry/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bary_sinkhorn_armadillo.cpp -o bary_sinkhorn_armadillo.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c iterative_bary.cpp -o iterative_bary.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c maaipm.cpp -o maaipm.o
iterative_bary.cpp: In function 'Rcpp::List wsbary_cxx_armaP(Rcpp::List, arma::mat, Rcpp::List, arma::mat, bool, int, int, int, double, double, bool, int, int)':
iterative_bary.cpp:61:10: warning: unused variable 'n' [-Wunused-variable]
   61 |   double n=weightsR.size();
      |          ^
iterative_bary.cpp:98:7: warning: unused variable 'L' [-Wunused-variable]
   98 |   int L;
      |       ^
iterative_bary.cpp:99:7: warning: unused variable 'dataCount' [-Wunused-variable]
   99 |   int dataCount=0;
      |       ^~~~~~~~~
maaipm.cpp: In function 'Rcpp::List maaipm_fixed_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, int, double, int)':
maaipm.cpp:182:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable]
  182 |   double relResidual_old_old = relResidual_old;
      |          ^~~~~~~~~~~~~~~~~~~
maaipm.cpp:185:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable]
  185 |   double rel_gap_old_old = rel_gap_old;
      |          ^~~~~~~~~~~~~~~
maaipm.cpp:186:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable]
  186 |   double optval=0;
      |          ^~~~~~
maaipm.cpp:207:7: warning: unused variable 'L' [-Wunused-variable]
  207 |   int L=x.n_elem;
      |       ^
maaipm.cpp: In function 'Rcpp::List maaipm_free_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, int, int, double, int)':
maaipm.cpp:415:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable]
  415 |   double relResidual_old_old = relResidual_old;
      |          ^~~~~~~~~~~~~~~~~~~
maaipm.cpp:418:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable]
  418 |   double rel_gap_old_old = rel_gap_old;
      |          ^~~~~~~~~~~~~~~
maaipm.cpp:419:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable]
  419 |   double optval=0;
      |          ^~~~~~
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c umaaipm.cpp -o umaaipm.o
umaaipm.cpp: In function 'Rcpp::List umaaipm_free_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, double, int, int, double, int)':
umaaipm.cpp:116:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable]
  116 |   double relResidual_old_old = relResidual_old;
      |          ^~~~~~~~~~~~~~~~~~~
umaaipm.cpp:119:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable]
  119 |   double rel_gap_old_old = rel_gap_old;
      |          ^~~~~~~~~~~~~~~
umaaipm.cpp:120:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable]
  120 |   double optval=0;
      |          ^~~~~~
umaaipm.cpp: In function 'Rcpp::List umaaipm_fixed_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, double, int, double, int)':
umaaipm.cpp:361:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable]
  361 |   double relResidual_old_old = relResidual_old;
      |          ^~~~~~~~~~~~~~~~~~~
umaaipm.cpp:364:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable]
  364 |   double rel_gap_old_old = rel_gap_old;
      |          ^~~~~~~~~~~~~~~
umaaipm.cpp:365:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable]
  365 |   double optval=0;
      |          ^~~~~~
umaaipm.cpp:387:7: warning: unused variable 'L' [-Wunused-variable]
  387 |   int L=x.n_elem;
      |       ^
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o WSGeometry.so RcppExports.o bary_sinkhorn_armadillo.o iterative_bary.o maaipm.o umaaipm.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/WSGeometry/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/WSGeometry/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/WSGeometry/src'
installing to /data/gannet/ripley/R/packages/tests-devel/WSGeometry.Rcheck/00LOCK-WSGeometry/00new/WSGeometry/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (WSGeometry)