* installing *source* package ‘WSGeometry’ ... ** package ‘WSGeometry’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/WSGeometry/src' g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bary_sinkhorn_armadillo.cpp -o bary_sinkhorn_armadillo.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c iterative_bary.cpp -o iterative_bary.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c maaipm.cpp -o maaipm.o iterative_bary.cpp: In function 'Rcpp::List wsbary_cxx_armaP(Rcpp::List, arma::mat, Rcpp::List, arma::mat, bool, int, int, int, double, double, bool, int, int)': iterative_bary.cpp:61:10: warning: unused variable 'n' [-Wunused-variable] 61 | double n=weightsR.size(); | ^ iterative_bary.cpp:98:7: warning: unused variable 'L' [-Wunused-variable] 98 | int L; | ^ iterative_bary.cpp:99:7: warning: unused variable 'dataCount' [-Wunused-variable] 99 | int dataCount=0; | ^~~~~~~~~ maaipm.cpp: In function 'Rcpp::List maaipm_fixed_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, int, double, int)': maaipm.cpp:182:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable] 182 | double relResidual_old_old = relResidual_old; | ^~~~~~~~~~~~~~~~~~~ maaipm.cpp:185:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable] 185 | double rel_gap_old_old = rel_gap_old; | ^~~~~~~~~~~~~~~ maaipm.cpp:186:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable] 186 | double optval=0; | ^~~~~~ maaipm.cpp:207:7: warning: unused variable 'L' [-Wunused-variable] 207 | int L=x.n_elem; | ^ maaipm.cpp: In function 'Rcpp::List maaipm_free_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, int, int, double, int)': maaipm.cpp:415:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable] 415 | double relResidual_old_old = relResidual_old; | ^~~~~~~~~~~~~~~~~~~ maaipm.cpp:418:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable] 418 | double rel_gap_old_old = rel_gap_old; | ^~~~~~~~~~~~~~~ maaipm.cpp:419:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable] 419 | double optval=0; | ^~~~~~ g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c umaaipm.cpp -o umaaipm.o umaaipm.cpp: In function 'Rcpp::List umaaipm_free_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, double, int, int, double, int)': umaaipm.cpp:116:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable] 116 | double relResidual_old_old = relResidual_old; | ^~~~~~~~~~~~~~~~~~~ umaaipm.cpp:119:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable] 119 | double rel_gap_old_old = rel_gap_old; | ^~~~~~~~~~~~~~~ umaaipm.cpp:120:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable] 120 | double optval=0; | ^~~~~~ umaaipm.cpp: In function 'Rcpp::List umaaipm_fixed_cpp(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::sp_mat, int, int, int, arma::vec, arma::vec, int, int, arma::sp_mat, double, int, double, int)': umaaipm.cpp:361:10: warning: variable 'relResidual_old_old' set but not used [-Wunused-but-set-variable] 361 | double relResidual_old_old = relResidual_old; | ^~~~~~~~~~~~~~~~~~~ umaaipm.cpp:364:10: warning: variable 'rel_gap_old_old' set but not used [-Wunused-but-set-variable] 364 | double rel_gap_old_old = rel_gap_old; | ^~~~~~~~~~~~~~~ umaaipm.cpp:365:10: warning: variable 'optval' set but not used [-Wunused-but-set-variable] 365 | double optval=0; | ^~~~~~ umaaipm.cpp:387:7: warning: unused variable 'L' [-Wunused-variable] 387 | int L=x.n_elem; | ^ g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o WSGeometry.so RcppExports.o bary_sinkhorn_armadillo.o iterative_bary.o maaipm.o umaaipm.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/WSGeometry/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/WSGeometry/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/WSGeometry/src' installing to /data/gannet/ripley/R/packages/tests-devel/WSGeometry.Rcheck/00LOCK-WSGeometry/00new/WSGeometry/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WSGeometry)