* installing *source* package ‘WGCNA’ ... ** package ‘WGCNA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (GCC) 13.2.0’ using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/WGCNA/src' gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_THREADS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c corFunctions-utils.c -o corFunctions-utils.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_THREADS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c corFunctions.c -o corFunctions.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_THREADS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c myMatrixMultiplication.c -o myMatrixMultiplication.o gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_THREADS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c networkFunctions.c -o networkFunctions.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_THREADS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c parallelQuantile.cc -o parallelQuantile.o parallelQuantile.cc: In function 'SEXPREC* parallelMean(SEXP, SEXP)': parallelQuantile.cc:81:12: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'R_xlen_t' {aka 'long int'} [-Wsign-compare] 81 | if (nSets!=weight.length()) | ~~~~~^~~~~~~~~~~~~~~~~ gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DWITH_THREADS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pivot.c -o pivot.o g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o WGCNA.so corFunctions-utils.o corFunctions.o myMatrixMultiplication.o networkFunctions.o parallelQuantile.o pivot.o -lpthread make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/WGCNA/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/WGCNA/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/WGCNA/src' installing to /data/gannet/ripley/R/packages/tests-devel/WGCNA.Rcheck/00LOCK-WGCNA/00new/WGCNA/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WGCNA)