Install log for 'TreeDist'

* installing *source* package ‘TreeDist’ ...
** this is package ‘TreeDist’ version ‘2.12.0’
** package ‘TreeDist’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/TreeDist/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c binary_entropy_counts.cpp -o binary_entropy_counts.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c day_1985.cpp -o day_1985.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c hmi.cpp -o hmi.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c hpart.cpp -o hpart.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c hpart_relabel.cpp -o hpart_relabel.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c lap.cpp -o lap.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mast.cpp -o mast.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c nni_distance.cpp -o nni_distance.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c path_vector.cpp -o path_vector.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c reduce_tree.cpp -o reduce_tree.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c spr.cpp -o spr.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c spr_lookup.cpp -o spr_lookup.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c tree_distance_functions.cpp -o tree_distance_functions.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TreeTools/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c tree_distances.cpp -o tree_distances.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o TreeDist.so RcppExports.o binary_entropy_counts.o day_1985.o hmi.o hpart.o hpart_relabel.o lap.o mast.o nni_distance.o path_vector.o reduce_tree.o spr.o spr_lookup.o tree_distance_functions.o tree_distances.o
tree_distance_functions.o: in function `std::basic_ios<char, std::char_traits<char> >::basic_ios()':
/usr/include/c++/15/bits/basic_ios.h:477:(.text.startup+0x108): relocation truncated to fit: R_X86_64_PC32 against `.bss'
/usr/include/c++/15/bits/basic_ios.h:476:(.text.startup+0x15f): relocation truncated to fit: R_X86_64_PC32 against `.bss'
/usr/include/c++/15/bits/basic_ios.h:476:(.text.startup+0x171): relocation truncated to fit: R_X86_64_PC32 against `.bss'
tree_distance_functions.o: in function `std::basic_ostream<char, std::char_traits<char> >::basic_ostream(std::basic_streambuf<char, std::char_traits<char> >*)':
/usr/include/c++/15/bits/ostream.h:93:(.text.startup+0x178): relocation truncated to fit: R_X86_64_PC32 against `.bss'
tree_distance_functions.o: in function `std::basic_ios<char, std::char_traits<char> >::basic_ios()':
/usr/include/c++/15/bits/basic_ios.h:477:(.text.startup+0x17f): relocation truncated to fit: R_X86_64_PC32 against `.bss'
/usr/include/c++/15/bits/basic_ios.h:477:(.text.startup+0x18a): relocation truncated to fit: R_X86_64_PC32 against `.bss'
tree_distance_functions.o: in function `std::basic_ostream<char, std::char_traits<char> >::basic_ostream(std::basic_streambuf<char, std::char_traits<char> >*)':
/usr/include/c++/15/bits/ostream.h:93:(.text.startup+0x191): relocation truncated to fit: R_X86_64_PC32 against `.bss'
/usr/include/c++/15/bits/ostream.h:93:(.text.startup+0x198): relocation truncated to fit: R_X86_64_PC32 against `.bss'
/usr/include/c++/15/bits/ostream.h:93:(.text.startup+0x19f): relocation truncated to fit: R_X86_64_PC32 against `.bss'
tree_distance_functions.o: in function `std::basic_streambuf<char, std::char_traits<char> >::basic_streambuf()':
/usr/include/c++/15/streambuf:475:(.text.startup+0x1b2): relocation truncated to fit: R_X86_64_PC32 against `.bss'
tree_distance_functions.o: in function `Rcpp::Rostream<true>::Rostream()':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:48:(.text.startup+0x1bf): additional relocation overflows omitted from the output
collect2: error: ld returned 1 exit status
make[1]: *** [/data/gannet/ripley/R/R-devel/share/make/shlib.mk:10: TreeDist.so] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/TreeDist/src'
ERROR: compilation failed for package ‘TreeDist’
* removing ‘/data/gannet/ripley/R/packages/tests-devel/TreeDist.Rcheck/TreeDist’