* installing *source* package ‘SubTite’ ...
** this is package ‘SubTite’ version ‘4.0.5’
** package ‘SubTite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SubTite/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c SUBGROUP.cpp -o SUBGROUP.o
SUBGROUP.cpp: In function ‘int Sample2(arma::vec)’:
SUBGROUP.cpp:30:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   30 |   for(m=1;m<groupprob.n_rows;m++){
      |           ~^~~~~~~~~~~~~~~~~
SUBGROUP.cpp:43:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   43 |     for(m=0;m<(groupprob.n_rows-2);m++){
      |             ~^~~~~~~~~~~~~~~~~~~~~
SUBGROUP.cpp: In function ‘int GetFullyFollowed(arma::vec, arma::vec, arma::vec, arma::vec, double)’:
SUBGROUP.cpp:72:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   72 |   for(m=0;m<Y.n_rows;m++){
      |           ~^~~~~~~~~
SUBGROUP.cpp: In function ‘double LikeStoppedCluster(arma::vec, arma::vec, arma::vec, arma::vec, double, double, arma::vec, arma::vec, double, int, arma::vec, arma::vec)’:
SUBGROUP.cpp:188:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  188 |   for(m=0;m<eta.n_rows;m++){
      |           ~^~~~~~~~~~~
SUBGROUP.cpp:189:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  189 |     for(k=0;k<a.n_rows;k++){
      |             ~^~~~~~~~~
SUBGROUP.cpp:204:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  204 |   for(m=0;m<eta.n_rows;m++){
      |           ~^~~~~~~~~~~
SUBGROUP.cpp:186:7: warning: unused variable ‘j’ [-Wunused-variable]
  186 |   int j=0;
      |       ^
SUBGROUP.cpp: In function ‘double LikeStoppedSeparate(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, double, int, arma::vec)’:
SUBGROUP.cpp:253:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  253 |   for(m=0;m<eta.n_rows;m++){
      |           ~^~~~~~~~~~~
SUBGROUP.cpp:254:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  254 |     for(k=0;k<a.n_rows;k++){
      |             ~^~~~~~~~~
SUBGROUP.cpp:269:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  269 |   for(m=0;m<eta.n_rows;m++){
      |           ~^~~~~~~~~~~
SUBGROUP.cpp:250:7: warning: unused variable ‘j’ [-Wunused-variable]
  250 |   int j=0;
      |       ^
SUBGROUP.cpp: In function ‘Rcpp::List MCMC(arma::vec, arma::vec, arma::vec, arma::vec, double, arma::vec, arma::vec, arma::vec, double, double, arma::vec, arma::vec, double, double, double, arma::vec, int, int, double)’:
SUBGROUP.cpp:413:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  413 |   for(g=0;g<PROBIN.n_rows;g++){
      |           ~^~~~~~~~~~~~~~
SUBGROUP.cpp:581:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  581 |   for(m=0;m<GroupMem.n_rows;m++){
      |           ~^~~~~~~~~~~~~~~~
SUBGROUP.cpp:651:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  651 |       for(k=0;k<aprop.n_rows;k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:682:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  682 |       for(k=0;k<aprop.size();k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:858:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  858 |       for(k=0;k<aprop.n_rows;k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:883:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  883 |       for(k=0;k<aprop.size();k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:1124:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1124 |       for(k=0;k<aprop.n_rows;k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:1149:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
 1149 |       for(k=0;k<aprop.size();k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:1229:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1229 |           for(k=0;k<bprop.n_rows;k++){
      |                   ~^~~~~~~~~~~~~
SUBGROUP.cpp:1267:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1267 |             for(k=0;k<aprop.n_rows;k++){
      |                     ~^~~~~~~~~~~~~
SUBGROUP.cpp:1280:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1280 |             for(k=0;k<bprop.n_rows;k++){
      |                     ~^~~~~~~~~~~~~
SUBGROUP.cpp:1301:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1301 |               for(k=0;k<aprop.n_rows;k++){
      |                       ~^~~~~~~~~~~~~
SUBGROUP.cpp:1326:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1326 |               for(k=0;k<aprop.n_rows;k++){
      |                       ~^~~~~~~~~~~~~
SUBGROUP.cpp:1340:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1340 |               for(k=0;k<bprop.n_rows;k++){
      |                       ~^~~~~~~~~~~~~
SUBGROUP.cpp:1361:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1361 |                 for(k=0;k<aprop.n_rows;k++){
      |                         ~^~~~~~~~~~~~~
SUBGROUP.cpp:1391:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1391 |               for(k=0;k<bprop.n_rows;k++){
      |                       ~^~~~~~~~~~~~~
SUBGROUP.cpp:1792:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1792 |       for(j=0;j<DoseProb.n_rows;j++){
      |               ~^~~~~~~~~~~~~~~~
SUBGROUP.cpp:418:7: warning: unused variable ‘MEANS’ [-Wunused-variable]
  418 |   int MEANS=0;
      |       ^~~~~
SUBGROUP.cpp:420:7: warning: unused variable ‘IntIN’ [-Wunused-variable]
  420 |   int IntIN=0;
      |       ^~~~~
SUBGROUP.cpp:421:7: warning: unused variable ‘IntOUT’ [-Wunused-variable]
  421 |   int IntOUT=0;
      |       ^~~~~~
SUBGROUP.cpp:430:7: warning: unused variable ‘Group’ [-Wunused-variable]
  430 |   int Group=0;
      |       ^~~~~
SUBGROUP.cpp:433:7: warning: unused variable ‘i’ [-Wunused-variable]
  433 |   int i=0; //For the patient index
      |       ^
SUBGROUP.cpp:434:7: warning: unused variable ‘rep’ [-Wunused-variable]
  434 |   int rep=0; //For the simulation repetition.
      |       ^~~
SUBGROUP.cpp:455:10: warning: unused variable ‘NewMean’ [-Wunused-variable]
  455 |   double NewMean=0;
      |          ^~~~~~~
SUBGROUP.cpp:456:10: warning: unused variable ‘NewSlope’ [-Wunused-variable]
  456 |   double NewSlope=0;
      |          ^~~~~~~~
SUBGROUP.cpp:457:7: warning: unused variable ‘Which1’ [-Wunused-variable]
  457 |   int Which1=0;
      |       ^~~~~~
SUBGROUP.cpp:458:7: warning: unused variable ‘J’ [-Wunused-variable]
  458 |   int J=Dose.n_rows; //Number of Doses
      |       ^
SUBGROUP.cpp:465:10: warning: unused variable ‘signew’ [-Wunused-variable]
  465 |   double signew=0;
      |          ^~~~~~
SUBGROUP.cpp:515:10: warning: unused variable ‘trialtime’ [-Wunused-variable]
  515 |   double trialtime=0;
      |          ^~~~~~~~~
SUBGROUP.cpp:519:10: warning: variable ‘NumSig’ set but not used [-Wunused-but-set-variable]
  519 |   double NumSig=2;
      |          ^~~~~~
SUBGROUP.cpp:520:10: warning: variable ‘IntSig’ set but not used [-Wunused-but-set-variable]
  520 |   double IntSig=1;
      |          ^~~~~~
SUBGROUP.cpp:521:10: warning: unused variable ‘sigvar’ [-Wunused-variable]
  521 |   double sigvar=1;
      |          ^~~~~~
SUBGROUP.cpp:532:10: warning: unused variable ‘DEC’ [-Wunused-variable]
  532 |   double DEC=0;
      |          ^~~
SUBGROUP.cpp: In function ‘arma::mat MCMCSIM(arma::vec, arma::vec, arma::vec, arma::vec, double, arma::vec, arma::vec, arma::vec, double, double, arma::vec, arma::vec, double, double, double, arma::vec, int, int, double)’:
SUBGROUP.cpp:1907:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 1907 |   for(g=0;g<PROBIN.n_rows;g++){
      |           ~^~~~~~~~~~~~~~
SUBGROUP.cpp:2075:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2075 |   for(m=0;m<GroupMem.n_rows;m++){
      |           ~^~~~~~~~~~~~~~~~
SUBGROUP.cpp:2144:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2144 |       for(k=0;k<aprop.n_rows;k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:2175:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
 2175 |       for(k=0;k<aprop.size();k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:2351:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2351 |       for(k=0;k<aprop.n_rows;k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:2376:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
 2376 |       for(k=0;k<aprop.size();k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:2616:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2616 |       for(k=0;k<aprop.n_rows;k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:2641:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
 2641 |       for(k=0;k<aprop.size();k++){
      |               ~^~~~~~~~~~~~~
SUBGROUP.cpp:2721:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2721 |           for(k=0;k<bprop.n_rows;k++){
      |                   ~^~~~~~~~~~~~~
SUBGROUP.cpp:2759:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2759 |             for(k=0;k<aprop.n_rows;k++){
      |                     ~^~~~~~~~~~~~~
SUBGROUP.cpp:2772:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2772 |             for(k=0;k<bprop.n_rows;k++){
      |                     ~^~~~~~~~~~~~~
SUBGROUP.cpp:2793:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2793 |               for(k=0;k<aprop.n_rows;k++){
      |                       ~^~~~~~~~~~~~~
SUBGROUP.cpp:2818:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2818 |               for(k=0;k<aprop.n_rows;k++){
      |                       ~^~~~~~~~~~~~~
SUBGROUP.cpp:2832:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2832 |               for(k=0;k<bprop.n_rows;k++){
      |                       ~^~~~~~~~~~~~~
SUBGROUP.cpp:2853:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2853 |                 for(k=0;k<aprop.n_rows;k++){
      |                         ~^~~~~~~~~~~~~
SUBGROUP.cpp:2883:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 2883 |               for(k=0;k<bprop.n_rows;k++){
      |                       ~^~~~~~~~~~~~~
SUBGROUP.cpp:3069:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 3069 |               for(m7=0;m7<aprop.n_rows;m7++){
      |                        ~~^~~~~~~~~~~~~
SUBGROUP.cpp:3303:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 3303 |       for(j=0;j<DoseProb.n_rows;j++){
      |               ~^~~~~~~~~~~~~~~~
SUBGROUP.cpp:1912:7: warning: unused variable ‘MEANS’ [-Wunused-variable]
 1912 |   int MEANS=0;
      |       ^~~~~
SUBGROUP.cpp:1914:7: warning: unused variable ‘IntIN’ [-Wunused-variable]
 1914 |   int IntIN=0;
      |       ^~~~~
SUBGROUP.cpp:1915:7: warning: unused variable ‘IntOUT’ [-Wunused-variable]
 1915 |   int IntOUT=0;
      |       ^~~~~~
SUBGROUP.cpp:1924:7: warning: unused variable ‘Group’ [-Wunused-variable]
 1924 |   int Group=0;
      |       ^~~~~
SUBGROUP.cpp:1927:7: warning: unused variable ‘i’ [-Wunused-variable]
 1927 |   int i=0; //For the patient index
      |       ^
SUBGROUP.cpp:1928:7: warning: unused variable ‘rep’ [-Wunused-variable]
 1928 |   int rep=0; //For the simulation repetition.
      |       ^~~
SUBGROUP.cpp:1949:10: warning: unused variable ‘NewMean’ [-Wunused-variable]
 1949 |   double NewMean=0;
      |          ^~~~~~~
SUBGROUP.cpp:1950:10: warning: unused variable ‘NewSlope’ [-Wunused-variable]
 1950 |   double NewSlope=0;
      |          ^~~~~~~~
SUBGROUP.cpp:1951:7: warning: unused variable ‘Which1’ [-Wunused-variable]
 1951 |   int Which1=0;
      |       ^~~~~~
SUBGROUP.cpp:1952:7: warning: unused variable ‘J’ [-Wunused-variable]
 1952 |   int J=Dose.n_rows; //Number of Doses
      |       ^
SUBGROUP.cpp:1959:10: warning: unused variable ‘signew’ [-Wunused-variable]
 1959 |   double signew=0;
      |          ^~~~~~
SUBGROUP.cpp:2010:10: warning: unused variable ‘trialtime’ [-Wunused-variable]
 2010 |   double trialtime=0;
      |          ^~~~~~~~~
SUBGROUP.cpp:2014:10: warning: variable ‘NumSig’ set but not used [-Wunused-but-set-variable]
 2014 |   double NumSig=2;
      |          ^~~~~~
SUBGROUP.cpp:2015:10: warning: variable ‘IntSig’ set but not used [-Wunused-but-set-variable]
 2015 |   double IntSig=1;
      |          ^~~~~~
SUBGROUP.cpp:2016:10: warning: unused variable ‘sigvar’ [-Wunused-variable]
 2016 |   double sigvar=1;
      |          ^~~~~~
SUBGROUP.cpp:2027:10: warning: unused variable ‘DEC’ [-Wunused-variable]
 2027 |   double DEC=0;
      |          ^~~
SUBGROUP.cpp: In function ‘Rcpp::List SimTrial1(int, int, double, arma::vec, arma::vec, arma::vec, arma::vec, double, arma::vec, int, arma::mat, arma::mat, double, double, arma::vec, arma::vec, double, double, double, double, double, int, int)’:
SUBGROUP.cpp:3414:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 3414 |   for(g=0;g<PROBIN.n_rows;g++){
      |           ~^~~~~~~~~~~~~~
SUBGROUP.cpp:3884:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 3884 |         for(j=DoseStart(k);j<Dose.n_rows;j++){
      |                            ~^~~~~~~~~~~~
SUBGROUP.cpp:3919:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 3919 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SUBGROUP.cpp:3923:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
 3923 |       for(j=DoseStart(k);j<(Dose.n_rows-1);j++){
      |                          ~^~~~~~~~~~~~~~~~
SUBGROUP.cpp:4140:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 4140 |             for(j=0;j<Dose.n_rows;j++){
      |                     ~^~~~~~~~~~~~
SUBGROUP.cpp:4144:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
 4144 |             for(j=DoseStart(k);j<Dose.n_rows;j++){
      |                                ~^~~~~~~~~~~~
SUBGROUP.cpp:3418:7: warning: unused variable ‘MEANS’ [-Wunused-variable]
 3418 |   int MEANS=0;
      |       ^~~~~
SUBGROUP.cpp:3420:7: warning: unused variable ‘IntIN’ [-Wunused-variable]
 3420 |   int IntIN=0;
      |       ^~~~~
SUBGROUP.cpp:3421:7: warning: unused variable ‘IntOUT’ [-Wunused-variable]
 3421 |   int IntOUT=0;
      |       ^~~~~~
SUBGROUP.cpp:3424:10: warning: unused variable ‘varbeta1’ [-Wunused-variable]
 3424 |   double varbeta1=varbeta;
      |          ^~~~~~~~
SUBGROUP.cpp:3426:10: warning: unused variable ‘varint1’ [-Wunused-variable]
 3426 |   double varint1=varint;
      |          ^~~~~~~
SUBGROUP.cpp:3465:10: warning: unused variable ‘mu’ [-Wunused-variable]
 3465 |   double mu=meanmu;
      |          ^~
SUBGROUP.cpp:3466:10: warning: unused variable ‘slope’ [-Wunused-variable]
 3466 |   double slope=meanslope;
      |          ^~~~~
SUBGROUP.cpp:3467:10: warning: unused variable ‘sig’ [-Wunused-variable]
 3467 |   double sig=T1;
      |          ^~~
SUBGROUP.cpp:3469:10: warning: unused variable ‘NewMean’ [-Wunused-variable]
 3469 |   double NewMean=0;
      |          ^~~~~~~
SUBGROUP.cpp:3470:10: warning: unused variable ‘NewSlope’ [-Wunused-variable]
 3470 |   double NewSlope=0;
      |          ^~~~~~~~
SUBGROUP.cpp:3471:7: warning: unused variable ‘Which1’ [-Wunused-variable]
 3471 |   int Which1=0;
      |       ^~~~~~
SUBGROUP.cpp:3477:10: warning: unused variable ‘alpha’ [-Wunused-variable]
 3477 |   double alpha=0;
      |          ^~~~~
SUBGROUP.cpp:3478:10: warning: unused variable ‘U’ [-Wunused-variable]
 3478 |   double U=0;
      |          ^
SUBGROUP.cpp:3479:10: warning: unused variable ‘signew’ [-Wunused-variable]
 3479 |   double signew=0;
      |          ^~~~~~
SUBGROUP.cpp:3480:10: warning: unused variable ‘slopenew’ [-Wunused-variable]
 3480 |   double slopenew=0;
      |          ^~~~~~~~
SUBGROUP.cpp:3481:10: warning: unused variable ‘Munew’ [-Wunused-variable]
 3481 |   double Munew=0;
      |          ^~~~~
SUBGROUP.cpp:3492:7: warning: unused variable ‘StoreInx’ [-Wunused-variable]
 3492 |   int StoreInx=0;
      |       ^~~~~~~~
SUBGROUP.cpp:3514:10: warning: unused variable ‘NumMu’ [-Wunused-variable]
 3514 |   double NumMu = 2;
      |          ^~~~~
SUBGROUP.cpp:3515:10: warning: unused variable ‘NumSlope’ [-Wunused-variable]
 3515 |   double NumSlope=2;
      |          ^~~~~~~~
SUBGROUP.cpp:3516:10: warning: unused variable ‘IntMu’ [-Wunused-variable]
 3516 |   double IntMu=1;
      |          ^~~~~
SUBGROUP.cpp:3517:10: warning: unused variable ‘IntSlope’ [-Wunused-variable]
 3517 |   double IntSlope=1;
      |          ^~~~~~~~
SUBGROUP.cpp:3530:10: warning: unused variable ‘muvar’ [-Wunused-variable]
 3530 |   double muvar=1;
      |          ^~~~~
SUBGROUP.cpp:3531:10: warning: unused variable ‘slopevar’ [-Wunused-variable]
 3531 |   double slopevar=1;
      |          ^~~~~~~~
SUBGROUP.cpp:3536:10: warning: unused variable ‘NumSig’ [-Wunused-variable]
 3536 |   double NumSig=2;
      |          ^~~~~~
SUBGROUP.cpp:3537:10: warning: unused variable ‘IntSig’ [-Wunused-variable]
 3537 |   double IntSig=1;
      |          ^~~~~~
SUBGROUP.cpp:3538:10: warning: unused variable ‘sigvar’ [-Wunused-variable]
 3538 |   double sigvar=1;
      |          ^~~~~~
SUBGROUP.cpp:3565:7: warning: unused variable ‘eta2’ [-Wunused-variable]
 3565 |   int eta2=0;
      |       ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o SubTite.so RcppExports.o SUBGROUP.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SubTite/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SubTite/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SubTite/src'
installing to /data/gannet/ripley/R/packages/tests-devel/SubTite.Rcheck/00LOCK-SubTite/00new/SubTite/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SubTite)