* installing *source* package ‘SNPassoc’ ...
** this is package ‘SNPassoc’ version ‘2.3.1’
** package ‘SNPassoc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/SNPassoc/src'
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c SNPassoc_init.c -o SNPassoc_init.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c groupsum.c -o groupsum.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c haplo_em_pin.c -o haplo_em_pin.o
haplo_em_pin.c: In function ‘haplo_em_pin’:
haplo_em_pin.c:270:27: warning: ‘lnlike_old’ may be used uninitialized [-Wmaybe-uninitialized]
  270 |           if (fabs(lnlike - lnlike_old) < *tol){
      |                    ~~~~~~~^~~~~~~~~~~~
haplo_em_pin.c:97:18: note: ‘lnlike_old’ was declared here
   97 |   double lnlike, lnlike_old;
      |                  ^~~~~~~~~~
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c louis_info.c -o louis_info.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c seqhap.c -o seqhap.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o SNPassoc.so SNPassoc_init.o groupsum.o haplo_em_pin.o louis_info.o seqhap.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/SNPassoc/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/SNPassoc/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/SNPassoc/src'
installing to /data/localhost/ripley/R/packages/tests-devel/SNPassoc.Rcheck/00LOCK-SNPassoc/00new/SNPassoc/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SNPassoc)