Install log for 'SKFCPD'

* installing *source* package ‘SKFCPD’ ...
** package ‘SKFCPD’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.0.1 20240503 (prerelease)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SKFCPD/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c functions_GP_KF_multi_dim_2023_05_27.cpp -o functions_GP_KF_multi_dim_2023_05_27.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:188,
                 from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:26,
                 from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
                 from functions_GP_KF_multi_dim_2023_05_27.cpp:6:
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
    inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:465:46,
    inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:489:40,
    inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:744:34,
    inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
    inlined from 'static SEXPREC* Rcpp::internal::generic_element_converter<RTYPE>::get(const T&) [with T = double; int RTYPE = 19]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/converter.h:80:23,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch__isArgument(Rcpp::traits::false_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:532:13,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch(Rcpp::traits::true_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:525:46,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element(iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:514:34,
    inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create__dispatch(Rcpp::traits::true_type, const T1&, const T2&, const T3&, const T4&) [with T1 = Rcpp::traits::named_object<Eigen::Matrix<double, -1, -1> >; T2 = Rcpp::traits::named_object<Eigen::Matrix<double, -1, -1> >; T3 = Rcpp::traits::named_object<Eigen::Matrix<double, -1, -1> >; T4 = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/generated/Vector__create.h:233:24,
    inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&) [with T1 = Rcpp::traits::named_object<Eigen::Matrix<double, -1, -1> >; T2 = Rcpp::traits::named_object<Eigen::Matrix<double, -1, -1> >; T3 = Rcpp::traits::named_object<Eigen::Matrix<double, -1, -1> >; T4 = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/generated/Vector__create.h:202:29,
    inlined from 'Rcpp::List Construct_G_W_W0_V(double, double, double, Rcpp::String, bool)' at functions_GP_KF_multi_dim_2023_05_27.cpp:140:26:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:442:41: warning: 'VV' may be used uninitialized [-Wmaybe-uninitialized]
  442 |             r_vector_start<RTYPE>(x)[0] = object;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
functions_GP_KF_multi_dim_2023_05_27.cpp: In function 'Rcpp::List Construct_G_W_W0_V(double, double, double, Rcpp::String, bool)':
functions_GP_KF_multi_dim_2023_05_27.cpp:106:10: note: 'VV' was declared here
  106 |   double VV;
      |          ^~
In function 'SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]',
    inlined from 'SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:465:46,
    inlined from 'SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:489:40,
    inlined from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:744:34,
    inlined from 'SEXPREC* Rcpp::wrap(const T&) [with T = double]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
    inlined from 'static SEXPREC* Rcpp::internal::generic_element_converter<RTYPE>::get(const T&) [with T = double; int RTYPE = 19]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/converter.h:80:23,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch__isArgument(Rcpp::traits::false_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:532:13,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch(Rcpp::traits::true_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:525:46,
    inlined from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element(iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:514:34,
    inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create__dispatch(Rcpp::traits::true_type, const T1&, const T2&, const T3&, const T4&, const T5&) [with T1 = Rcpp::traits::named_object<double>; T2 = Rcpp::traits::named_object<double>; T3 = Rcpp::traits::named_object<double>; T4 = Rcpp::traits::named_object<double>; T5 = Rcpp::traits::named_object<Rcpp::Vector<19> >; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/generated/Vector__create.h:279:24,
    inlined from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&) [with T1 = Rcpp::traits::named_object<double>; T2 = Rcpp::traits::named_object<double>; T3 = Rcpp::traits::named_object<double>; T4 = Rcpp::traits::named_object<double>; T5 = Rcpp::traits::named_object<Rcpp::Vector<19> >; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]' at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/generated/Vector__create.h:247:33,
    inlined from 'Rcpp::List get_predictive_dist_KF_objective_prior(double, double, Rcpp::List, Rcpp::List, double, double, int, double, double, double, Rcpp::String)' at functions_GP_KF_multi_dim_2023_05_27.cpp:580:23:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:442:41: warning: 'log_pred_dist' may be used uninitialized [-Wmaybe-uninitialized]
  442 |             r_vector_start<RTYPE>(x)[0] = object;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
functions_GP_KF_multi_dim_2023_05_27.cpp: In function 'Rcpp::List get_predictive_dist_KF_objective_prior(double, double, Rcpp::List, Rcpp::List, double, double, int, double, double, double, Rcpp::String)':
functions_GP_KF_multi_dim_2023_05_27.cpp:531:12: note: 'log_pred_dist' was declared here
  531 |     double log_pred_dist;
      |            ^~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o SKFCPD.so RcppExports.o functions_GP_KF_multi_dim_2023_05_27.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SKFCPD/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SKFCPD/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SKFCPD/src'
installing to /data/gannet/ripley/R/packages/tests-devel/SKFCPD.Rcheck/00LOCK-SKFCPD/00new/SKFCPD/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SKFCPD)