Install log for 'SFS'

* installing *source* package ‘SFS’ ...
** package ‘SFS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SFS/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c SFSMatrix.cpp -o SFSMatrix.o
In file included from SFSMatrix.cpp:26:
SFSMatrix.h:48: warning: "assert" redefined
   48 | #define assert(x) sfs_assert_thrower((x),__FILE__, __LINE__)
      | 
In file included from /usr/local/gcc13/include/c++/13.2.0/cassert:44,
                 from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:137,
                 from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/utils/tinyformat.h:40,
                 from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:73,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:29,
                 from SFSMatrix.h:36:
/usr/include/assert.h:50: note: this is the location of the previous definition
   50 | # define assert(expr)           (__ASSERT_VOID_CAST (0))
      | 
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rcpp_sfs.cpp -o rcpp_sfs.o
In file included from rcpp_sfs.cpp:26:
SFSMatrix.h:48: warning: "assert" redefined
   48 | #define assert(x) sfs_assert_thrower((x),__FILE__, __LINE__)
      | 
In file included from /usr/local/gcc13/include/c++/13.2.0/cassert:44,
                 from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:137,
                 from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/utils/tinyformat.h:40,
                 from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:73,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:29,
                 from rcpp_sfs.cpp:24:
/usr/include/assert.h:50: note: this is the location of the previous definition
   50 | # define assert(expr)           (__ASSERT_VOID_CAST (0))
      | 
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o SFS.so RcppExports.o SFSMatrix.o rcpp_sfs.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SFS/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SFS/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SFS/src'
installing to /data/gannet/ripley/R/packages/tests-devel/SFS.Rcheck/00LOCK-SFS/00new/SFS/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SFS)