* installing *source* package ‘SAMtool’ ...
** package ‘SAMtool’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SAMtool/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c SAMtool.cpp -o SAMtool.o
In file included from ../inst/include/functions.hpp:295,
                 from SAMtool.cpp:3:
../inst/include/ns/ns_DD.hpp: In function 'Type ns_DD::Newton_F(tmbutils::vector<Type>, Type, tmbutils::vector<Type>, Type, int, int, Type&) [with Type = double]':
../inst/include/ns/ns_DD.hpp:31:10: warning: 'F_out' may be used uninitialized [-Wmaybe-uninitialized]
   31 |   return F_out;
      |          ^~~~~
../inst/include/ns/ns_DD.hpp:7:8: note: 'F_out' was declared here
    7 |   Type F_out;
      |        ^~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o SAMtool.so SAMtool.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SAMtool/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SAMtool/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SAMtool/src'
installing to /data/gannet/ripley/R/packages/tests-devel/SAMtool.Rcheck/00LOCK-SAMtool/00new/SAMtool/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘simulate’ in package ‘SAMtool’
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SAMtool)