* installing *source* package ‘Rsomoclu’ ...
** package ‘Rsomoclu’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (GCC) 14.1.0’
using C++ compiler: ‘g++-14 (GCC) 14.1.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rsomoclu/src'
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DHAVE_R -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Rsomoclu.cpp -o Rsomoclu.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c Rsomoclu_init.c -o Rsomoclu_init.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DHAVE_R -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c denseCpuKernels.cpp -o denseCpuKernels.o
Rsomoclu.cpp: In function 'SEXPREC* Rtrain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
Rsomoclu.cpp:86:26: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   86 |         for(int i = 0; i < nSomX; i++) {
      |                        ~~^~~~~~~
Rsomoclu.cpp:87:35: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   87 |                 for (int j = 0; j < nSomY; j++) {
      |                                 ~~^~~~~~~
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DHAVE_R -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mapDistanceFunctions.cpp -o mapDistanceFunctions.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DHAVE_R -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c sparseCpuKernels.cpp -o sparseCpuKernels.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DHAVE_R -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c training.cpp -o training.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include   -fopenmp -DHAVE_R -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c uMatrix.cpp -o uMatrix.o
training.cpp: In function 'void train(int, float*, svm_node**, som, unsigned int, unsigned int, float, float, std::string, float, float, std::string, unsigned int, bool, bool, float, unsigned int, Snapshot*)':
training.cpp:201:16: warning: unused variable 'epoch_time' [-Wunused-variable]
  201 |         double epoch_time = get_wall_time();
      |                ^~~~~~~~~~
training.cpp:146:9: warning: unused variable 'nProcs' [-Wunused-variable]
  146 |     int nProcs = 1;
      |         ^~~~~~
g++-14 -std=gnu++11 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o Rsomoclu.so Rsomoclu.o Rsomoclu_init.o denseCpuKernels.o mapDistanceFunctions.o sparseCpuKernels.o training.o uMatrix.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rsomoclu/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rsomoclu/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rsomoclu/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Rsomoclu.Rcheck/00LOCK-Rsomoclu/00new/Rsomoclu/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rsomoclu)