Install log for 'RobustGaSP'

* installing *source* package ‘RobustGaSP’ ...
** package ‘RobustGaSP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RobustGaSP/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c functions.cpp -o functions.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
In file included from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/util/ConfigureVectorization.h:346,
                 from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Core:22,
                 from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
                 from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:28,
                 from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
                 from functions.cpp:9:
In function '__m128d _mm_loadu_pd(const double*)',
    inlined from 'Packet Eigen::internal::ploadu(const typename unpacket_traits<T>::type*) [with Packet = __vector(2) double]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:746:22,
    inlined from 'Packet Eigen::internal::ploadt(const typename unpacket_traits<T>::type*) [with Packet = __vector(2) double; int Alignment = 0]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:969:26,
    inlined from 'PacketType Eigen::internal::evaluator<Eigen::PlainObjectBase<Derived> >::packet(Eigen::Index) const [with int LoadMode = 0; PacketType = __vector(2) double; Derived = Eigen::Matrix<double, 1, 1, 0, 1, 1>]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:245:40,
    inlined from 'void Eigen::internal::generic_dense_assignment_kernel<DstEvaluatorTypeT, SrcEvaluatorTypeT, Functor, Version>::assignPacket(Eigen::Index) [with int StoreMode = 16; int LoadMode = 0; PacketType = __vector(2) double; DstEvaluatorTypeT = Eigen::internal::evaluator<Eigen::Matrix<double, -1, -1> >; SrcEvaluatorTypeT = Eigen::internal::evaluator<Eigen::Matrix<double, 1, 1, 0, 1, 1> >; Functor = Eigen::internal::assign_op<double, double>; int Version = 0]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:681:114,
    inlined from 'static void Eigen::internal::dense_assignment_loop<Kernel, 3, 0>::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, -1, -1> >, Eigen::internal::evaluator<Eigen::Matrix<double, 1, 1, 0, 1, 1> >, Eigen::internal::assign_op<double, double>, 0>]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:437:75,
    inlined from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Functor = assign_op<double, double>]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785:37,
    inlined from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31,
    inlined from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Func = assign_op<double, double>]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49,
    inlined from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>; Func = assign_op<double, double>]' at /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:851:27:
/usr/local/gcc13/lib/gcc/x86_64-pc-linux-gnu/13.2.0/include/emmintrin.h:134:24: warning: array subscript '__m128d_u[0]' is partly outside array bounds of 'Eigen::internal::plain_matrix_type<Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>, Eigen::Dense>::type [1]' {aka 'Eigen::Matrix<double, 1, 1, 0, 1, 1> [1]'} [-Warray-bounds=]
  134 |   return *(__m128d_u *)__P;
      |                        ^~~
In file included from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Core:278:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h: In function 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<evaluator_assume_aliasing<Src>::value, void*>::type) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::Product<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, Eigen::Transpose<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >, 0>; Func = assign_op<double, double>]':
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:850:41: note: object 'tmp' of size 8
  850 |   typename plain_matrix_type<Src>::type tmp(src);
      |                                         ^~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o RobustGaSP.so RcppExports.o functions.o init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RobustGaSP/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RobustGaSP/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RobustGaSP/src'
installing to /data/gannet/ripley/R/packages/tests-devel/RobustGaSP.Rcheck/00LOCK-RobustGaSP/00new/RobustGaSP/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘simulate’ in package ‘RobustGaSP’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RobustGaSP)