* installing *source* package ‘Rdsdp’ ...
** this is package ‘Rdsdp’ version ‘1.0.6’
** package ‘Rdsdp’ successfully unpacked and MD5 sums checked
** using staged installation
./configure: line 2303: -z: command not found
Using bundled DSDP
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking how to run the C preprocessor... gcc -E
R_INCLUDE_DIR=/data/gannet/ripley/R/R-devel/include
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Idsdp/include -DUSING_R -I/usr/local/include -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Rdsdp.c -o Rdsdp.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Idsdp/include -DUSING_R -I/usr/local/include -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Rreadsdpa.c -o Rreadsdpa.o
Rreadsdpa.c: In function ‘ReadSDPA2’:
Rreadsdpa.c:489:9: warning: variable ‘fgets_return_pt’ set but not used [-Wunused-but-set-variable]
489 | char* fgets_return_pt;
| ^~~~~~~~~~~~~~~
Rreadsdpa.c:488:7: warning: variable ‘fscanf_return_int’ set but not used [-Wunused-but-set-variable]
488 | int fscanf_return_int;
| ^~~~~~~~~~~~~~~~~
Rreadsdpa.c: In function ‘DSDPReadOptions2’:
Rreadsdpa.c:1021:9: warning: variable ‘fgets_return_pt’ set but not used [-Wunused-but-set-variable]
1021 | char* fgets_return_pt;
| ^~~~~~~~~~~~~~~
(cd dsdp && \
(make dsdplibrary CC="gcc" CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include " AR="gcc-ar" RANLIB="gcc-ranlib") && \
touch dsdp.ts)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp'
==========================================
Compiling DSDP5
For help with installation problems, please send EVERYTHING
printed out below to the developers
==========================================
On Sat 8 Nov 22:41:33 GMT 2025 on gannet.stats.ox.ac.uk
Machine characteristics: Linux gannet.stats.ox.ac.uk 6.14.6-300.fc42.x86_64 #1 SMP PREEMPT_DYNAMIC Fri May 9 20:11:19 UTC 2025 x86_64 GNU/Linux
-----------------------------------------
Using C compiler: gcc
Using compiler options: -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include
-----------------------------------------
Current Directory: /data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp
Using DSDP directory: ../../
==========================================
cd src; make all
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src'
cd solver; make dsdplib;
make[4]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/solver'
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dualalg.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dualimpl.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpcops.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpschurmat.c
dsdpschurmat.c: In function ‘DSDPSetFixedVariables’:
dsdpschurmat.c:696:10: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
696 | int i,info;
| ^~~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpcg.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpconverge.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpsetup.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpcone.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpsetoptions.c
dsdpsetoptions.c: In function ‘DSDPReadOptions’:
dsdpsetoptions.c:152:9: warning: variable ‘fgets_return_pt’ set but not used [-Wunused-but-set-variable]
152 | char* fgets_return_pt;
| ^~~~~~~~~~~~~~~
dsdpsetoptions.c:147:9: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
147 | int i,info,line=0;
| ^~~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpsetdata.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdprescone.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpobjcone.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpprintout.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpschurmatadd.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpx.c
dsdpx.c: In function ‘DSDPComputeX’:
dsdpx.c:57:76: warning: variable ‘rpobjerr’ set but not used [-Wunused-but-set-variable]
57 | double pobj=0,ppobj2=0,ddobj,tracexs=0,tracexs2=0,rpinfeas=0,rpinfeas2=0,rpobjerr=0;
| ^~~~~~~~
gcc-ar cr ../..//lib/libdsdp.a dualalg.o dualimpl.o dsdpcops.o dsdpschurmat.o dsdpcg.o dsdpconverge.o dsdpsetup.o dsdpcone.o dsdpsetoptions.o dsdpsetdata.o dsdprescone.o dsdpobjcone.o dsdpprintout.o dsdpschurmatadd.o dsdpx.o
gcc-ranlib ../..//lib/libdsdp.a
make clean
make[5]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/solver'
rm -f dualalg.o dualimpl.o dsdpcops.o dsdpschurmat.o dsdpcg.o dsdpconverge.o dsdpsetup.o dsdpcone.o dsdpsetoptions.o dsdpsetdata.o dsdprescone.o dsdpobjcone.o dsdpprintout.o dsdpschurmatadd.o dsdpx.o
make[5]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/solver'
make[4]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/solver'
cd sdp; make dsdplib;
make[4]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/sdp'
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpstep.c
dsdpstep.c: In function ‘ComputeStepROBUST’:
dsdpstep.c:283:10: warning: variable ‘LDA’ set but not used [-Wunused-but-set-variable]
283 | int N, LDA, LWORK;
| ^~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c printsdpa.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpconevec.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpsss.c
sdpsss.c: In function ‘CountNonzeros’:
sdpsss.c:59:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
59 | for (j=0;j<m;j++) innz[j]=1;innz[0]=0;
| ^~~
sdpsss.c:59:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
59 | for (j=0;j<m;j++) innz[j]=1;innz[0]=0;
| ^~~~
sdpsss.c:63:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
63 | for (j=0;j<m;j++) innz[j]=0;innz[0]=1;
| ^~~
sdpsss.c:63:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
63 | for (j=0;j<m;j++) innz[j]=0;innz[0]=1;
| ^~~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpadddata.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpadddatamat.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpblock.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpcone.c
sdpcone.c: In function ‘SDPConeAddXVAV’:
sdpcone.c:296:11: warning: variable ‘W’ set but not used [-Wunused-but-set-variable]
296 | DSDPVec W,Wout;
| ^
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpkcone.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpcompute.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpconesetup.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpdsmat.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpdatamat.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpdualmat.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpxmat.c
gcc-ar cr ../..//lib/libdsdp.a dsdpstep.o printsdpa.o sdpconevec.o sdpsss.o dsdpadddata.o dsdpadddatamat.o dsdpblock.o sdpcone.o sdpkcone.o sdpcompute.o sdpconesetup.o dsdpdsmat.o dsdpdatamat.o dsdpdualmat.o dsdpxmat.o
gcc-ranlib ../..//lib/libdsdp.a
make clean
make[5]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/sdp'
rm -f dsdpstep.o printsdpa.o sdpconevec.o sdpsss.o dsdpadddata.o dsdpadddatamat.o dsdpblock.o sdpcone.o sdpkcone.o sdpcompute.o sdpconesetup.o dsdpdsmat.o dsdpdatamat.o dsdpdualmat.o dsdpxmat.o
make[5]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/sdp'
make[4]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/sdp'
cd lp; make dsdplib;
make[4]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/lp'
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdplp.c
gcc-ar cr ../..//lib/libdsdp.a dsdplp.o
gcc-ranlib ../..//lib/libdsdp.a
make clean
make[5]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/lp'
rm -f dsdplp.o
make[5]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/lp'
make[4]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/lp'
cd vecmat; make dsdplib;
make[4]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/vecmat'
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c vech.c
vech.c: In function ‘VechMatVecVec’:
vech.c:96:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
96 | int info,rank=n,i=0,j,k,kk;
| ^~~~
vech.c: In function ‘DSDPGetVechMat’:
vech.c:462:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable]
462 | double dtmp;
| ^~~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c vechu.c
vechu.c: In function ‘VechMatVecVec’:
vechu.c:80:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
80 | int info,rank=n,i=0,j,k,kk;
| ^~~~
vechu.c: In function ‘DSDPGetVecUMat’:
vechu.c:456:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable]
456 | double dtmp;
| ^~~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c drowcol.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c dlpack.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c dufull.c
dlpack.c: In function ‘DTPUMatCreateWData’:
dlpack.c:66:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable]
66 | double dtmp;
| ^~~~
dlpack.c: In function ‘DTPUMatCholeskyFactor’:
dlpack.c:114:18: warning: variable ‘LDA’ set but not used [-Wunused-but-set-variable]
114 | ffinteger INFO,LDA=1,N=A->n;
| ^~~
dlpack.c: In function ‘DenseSymPSDNormF2’:
dlpack.c:423:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
423 | int info;
| ^~~~
dlpack.c: In function ‘DSDPXMatPCreateWithData’:
dlpack.c:587:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable]
587 | double dtmp;
| ^~~~
dlpack.c: In function ‘DvechmatGetRowAdd’:
dlpack.c:717:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
717 | int info;
| ^~~~
dlpack.c: In function ‘DSDPGetDMat’:
dlpack.c:939:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable]
939 | double dtmp;
| ^~~~
dufull.c: In function ‘DSDPGetEigs2’:
dufull.c:163:23: warning: variable ‘LDZ’ set but not used [-Wunused-but-set-variable]
163 | ffinteger N=n,LDA=n,LDZ=n,LWORK=nd,INFO=0;
| ^~~
dufull.c: In function ‘DTRUMatSolve’:
dufull.c:255:13: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable]
255 | ffinteger ierr,INFO=0,NRHS=1,LDA=A->LDA,LDB=A->LDA,N=A->n;
| ^~~~
dufull.c: In function ‘DSDPLAPACKSUDualMatCreate2P’:
dufull.c:822:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
822 | int info;
| ^~~~
dufull.c: In function ‘DenseSymPSDNormF2’:
dufull.c:855:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
855 | int info;
| ^~~~
dufull.c: In function ‘DSDPXMatUCreateWithData’:
dufull.c:958:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable]
958 | double dtmp;
| ^~~~
dufull.c: In function ‘DvecumatGetRowAdd’:
dufull.c:1075:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
1075 | int info;
| ^~~~
dufull.c: In function ‘DSDPGetDUMat’:
dufull.c:1302:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable]
1302 | double dtmp;
| ^~~~
dufull.c: At top level:
dufull.c:340:12: warning: ‘DTRUMatView2’ defined but not used [-Wunused-function]
340 | static int DTRUMatView2(void* AA){
| ^~~~~~~~~~~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpvec.c
sdpvec.c: In function ‘DSDPVecSetBasis’:
sdpvec.c:138:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
138 | int info;
| ^~~~
sdpvec.c: In function ‘DSDPVecWAXPY’:
sdpvec.c:341:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
341 | int info;
| ^~~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c identity.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c spds.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c zeromat.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c onemat.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c diag.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c rmmat.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c cholmat.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c cholmat2.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c dtrsm2.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpmatx.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpnfac.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdporder.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpalloc.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpsymb.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpxlist.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpdvct.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpexit.c
gcc-ar cr ../..//lib/libdsdp.a vech.o vechu.o drowcol.o dlpack.o dufull.o sdpvec.o identity.o spds.o zeromat.o onemat.o diag.o rmmat.o cholmat.o cholmat2.o dtrsm2.o sdpmatx.o sdpnfac.o sdporder.o sdpalloc.o sdpsymb.o sdpxlist.o sdpdvct.o sdpexit.o
gcc-ranlib ../..//lib/libdsdp.a
make clean
make[5]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/vecmat'
rm -f vech.o vechu.o drowcol.o dlpack.o dufull.o sdpvec.o identity.o spds.o zeromat.o onemat.o diag.o rmmat.o cholmat.o cholmat2.o dtrsm2.o sdpmatx.o sdpnfac.o sdporder.o sdpalloc.o sdpsymb.o sdpxlist.o sdpdvct.o sdpexit.o
make[5]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/vecmat'
make[4]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/vecmat'
cd sys; make dsdplib;
make[4]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/sys'
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdperror.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdploginfo.c
dsdploginfo.c: In function ‘DSDPLogInfoAllow’:
dsdploginfo.c:70:10: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable]
70 | char* ierr;
| ^~~~
dsdploginfo.c: In function ‘DSDPLogFInfo’:
dsdploginfo.c:118:15: warning: variable ‘urank’ set but not used [-Wunused-but-set-variable]
118 | int urank;
| ^~~~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdplog.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdptime.c
gcc-ar cr ../..//lib/libdsdp.a dsdperror.o dsdploginfo.o dsdplog.o dsdptime.o
gcc-ranlib ../..//lib/libdsdp.a
make clean
make[5]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/sys'
rm -f dsdperror.o dsdploginfo.o dsdplog.o dsdptime.o
make[5]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/sys'
make[4]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/sys'
cd bounds; make dsdplib;
make[4]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/bounds'
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dbounds.c
dbounds.c: In function ‘BConeComputeS’:
dbounds.c:90:12: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
90 | int i,ii,info;
| ^~~~
dbounds.c: In function ‘LPANorm2’:
dbounds.c:366:12: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
366 | int i,ii,info;
| ^~~~
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -DNOSHORTS -I/data/gannet/ripley/R/R-devel/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c allbounds.c
allbounds.c: In function ‘LUBoundsHessian’:
allbounds.c:100:18: warning: variable ‘asrs’ set but not used [-Wunused-but-set-variable]
100 | double assa,as,asrs=0,sl,su;
| ^~~~
gcc-ar cr ../..//lib/libdsdp.a dbounds.o allbounds.o
gcc-ranlib ../..//lib/libdsdp.a
make clean
make[5]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/bounds'
rm -f dbounds.o allbounds.o
make[5]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/bounds'
make[4]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src/bounds'
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp/src'
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src/dsdp'
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o Rdsdp.so Rdsdp.o Rreadsdpa.o -Ldsdp/lib -ldsdp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rdsdp/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Rdsdp.Rcheck/00LOCK-Rdsdp/00new/Rdsdp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rdsdp)