* installing *source* package ‘RcppCWB’ ... ** package ‘RcppCWB’ successfully unpacked and MD5 sums checked ** using staged installation * operating system detected for CWB configuration: Linux * Linux distribution ID: fedora (supported) * architecture: x86_64 ... using config 'linux-64' * using CWB platform configuration file: linux-64 * adapt CWB configuration file to use compiler: gcc-13 * using pkg-config to check whether glib-2.0 is available ... yes * using pkg-config to get linker flags for glib-2.0: -lglib-2.0 * check whether pcre2 is available ... yes (version: 10.40) * checking whether pcre2test is available ... no * using pcre2-config to get libdirs for pcre2 (8bit): -lpcre2-8 * using pcre2-config to get cflags for pcre2: * using build directory: /data/gannet/ripley/R/packages/tests-devel/RcppCWB ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src' g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/CQi -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/CQi -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c addons.cpp -o addons.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/CQi -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cl.cpp -o cl.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/CQi -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cqp.cpp -o cqp.o g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl -I/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/CQi -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.cpp -o utils.o cd cwb; R_PACKAGE_SOURCE=/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb PKG_CONFIG_PATH=/usr/local/lib64/pkgconfig:/usr/lib64/pkgconfig make clean make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' for i in cl cqp ; do if [ -f "$i/Makefile" ]; then cd $i; make clean; cd ..; fi; done; make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl' rm -f *.o libcl.a registry.output *~ make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl' make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp' rm -f cqp cqpcl cqpserver *.o ../CQi/*.o parser.output *~ ../CQi/*~ # TODO what is "parser.output" ? make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp' rm -f *~ config/*/*~ CQi/*~ CQi/*.o technical/*~ TAGS rm -f -rf build make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb PKG_CONFIG_PATH=/usr/local/lib64/pkgconfig:/usr/lib64/pkgconfig make depend make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' for i in cl cqp ; do cd $i; make depend.mk; cd ..; done; make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl' make[3]: 'depend.mk' is up to date. make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl' make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp' make[3]: 'depend.mk' is up to date. make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb PKG_CONFIG_PATH=/usr/local/lib64/pkgconfig:/usr/lib64/pkgconfig make cl make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' --------------------------------- BUILDING CORPUS LIBRARY (CL) cd cl; make make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl' gcc-13 -c -o globals.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:17 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread globals.c gcc-13 -c -o macros.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:17 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread macros.c gcc-13 -c -o ui-helpers.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:17 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread ui-helpers.c gcc-13 -c -o list.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:18 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread list.c gcc-13 -c -o lexhash.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:18 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread lexhash.c gcc-13 -c -o ngram-hash.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:18 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread ngram-hash.c gcc-13 -c -o bitfields.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:19 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread bitfields.c gcc-13 -c -o storage.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:19 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread storage.c gcc-13 -c -o fileutils.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:20 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread fileutils.c gcc-13 -c -o special-chars.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:20 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread special-chars.c gcc-13 -c -o regopt.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:21 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread regopt.c gcc-13 -c -o corpus.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:22 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread corpus.c gcc-13 -c -o attributes.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:23 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread attributes.c gcc-13 -c -o makecomps.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:23 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread makecomps.c gcc-13 -c -o registry.tab.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:24 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread registry.tab.c gcc-13 -c -o lex.creg.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:25 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread lex.creg.c gcc-13 -c -o cdaccess.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:26 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread cdaccess.c gcc-13 -c -o bitio.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:26 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread bitio.c gcc-13 -c -o endian.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:28 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread endian.c gcc-13 -c -o compression.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:28 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread compression.c gcc-13 -c -o dl_stub.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:28 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread dl_stub.c rm -f libcl.a ar cqs libcl.a globals.o macros.o ui-helpers.o list.o lexhash.o ngram-hash.o bitfields.o storage.o fileutils.o special-chars.o regopt.o corpus.o attributes.o makecomps.o registry.tab.o lex.creg.o cdaccess.o bitio.o endian.o compression.o make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb PKG_CONFIG_PATH=/usr/local/lib64/pkgconfig:/usr/lib64/pkgconfig make cqp make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' --------------------------------- BUILDING CQP cd cqp; make make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp' gcc-13 -c -o cqp.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:29 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread cqp.c gcc-13 -c -o symtab.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:29 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread symtab.c gcc-13 -c -o eval.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:30 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread eval.c gcc-13 -c -o tree.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:31 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread tree.c gcc-13 -c -o options.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:34 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread options.c gcc-13 -c -o corpmanag.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:35 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread corpmanag.c gcc-13 -c -o regex2dfa.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:36 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread regex2dfa.c gcc-13 -c -o output.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:37 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread output.c gcc-13 -c -o ranges.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:38 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread ranges.c gcc-13 -c -o builtins.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:39 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread builtins.c gcc-13 -c -o groups.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:41 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread groups.c gcc-13 -c -o targets.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:41 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread targets.c gcc-13 -c -o matchlist.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:42 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread matchlist.c gcc-13 -c -o concordance.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:43 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread concordance.c gcc-13 -c -o parse_actions.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:43 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread parse_actions.c gcc-13 -c -o attlist.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:44 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread attlist.c gcc-13 -c -o context_descriptor.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:46 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread context_descriptor.c gcc-13 -c -o print-modes.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:47 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread print-modes.c gcc-13 -c -o ascii-print.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:47 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread ascii-print.c gcc-13 -c -o sgml-print.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:47 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread sgml-print.c gcc-13 -c -o html-print.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:48 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread html-print.c gcc-13 -c -o latex-print.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:48 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread latex-print.c gcc-13 -c -o variables.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:49 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread variables.c gcc-13 -c -o print_align.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:49 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread print_align.c gcc-13 -c -o macro.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:50 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread macro.c gcc-13 -c -o parser.tab.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:50 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread parser.tab.c gcc-13 -c -o lex.yy.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:51 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread lex.yy.c gcc-13 -c -o ../CQi/server.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:53 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread ../CQi/server.c gcc-13 -c -o ../CQi/auth.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:54 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread ../CQi/auth.c gcc-13 -c -o ../CQi/log.o -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:55 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread ../CQi/log.c rm -f libcqp.a ar cqs libcqp.a cqp.o symtab.o eval.o tree.o options.o corpmanag.o regex2dfa.o output.o ranges.o builtins.o groups.o targets.o matchlist.o concordance.o parse_actions.o attlist.o context_descriptor.o print-modes.o ascii-print.o sgml-print.o html-print.o latex-print.o variables.o print_align.o macro.o parser.tab.o lex.yy.o ../CQi/server.o ../CQi/auth.o ../CQi/log.o make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb PKG_CONFIG_PATH=/usr/local/lib64/pkgconfig:/usr/lib64/pkgconfig make utils make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' --------------------------------- BUILDING UTILITIES cd utils; make make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/utils' gcc-13 -c -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:56 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -o cwb-encode.o cwb-encode.c gcc-13 -c -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:56 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -o cwb-makeall.o cwb-makeall.c gcc-13 -c -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:58 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -o cwb-huffcode.o cwb-huffcode.c gcc-13 -c -O2 -Wall -fPIC -fPIC -m64 -DUSE_TERMCAP -DUSE_READLINE -DCOMPILE_DATE=\""Thu 25 Apr 16:38:58 BST 2024"\" -DCWB_VERSION=\"3.4.33\" -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -o cwb-compress-rdx.o cwb-compress-rdx.c --------------------------------- CREATING ARCHIVE rm -f libcwb.a ar cqs libcwb.a cwb-encode.o cwb-makeall.o cwb-huffcode.o cwb-compress-rdx.o make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/utils' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb' g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o RcppCWB.so RcppExports.o addons.o cl.o cqp.o utils.o -L/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cl -L/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/cqp -L/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src/cwb/utils -lcwb -lcqp -lcl -lglib-2.0 -lpcre2-8 make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RcppCWB/src' installing to /data/gannet/ripley/R/packages/tests-devel/RcppCWB.Rcheck/00LOCK-RcppCWB/00new/RcppCWB/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppCWB)