* installing *source* package ‘RTMB’ ... ** package ‘RTMB’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (GCC) 14.0.1 20240430 (prerelease)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RTMB/src' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RTMB.cpp -o RTMB.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from RTMB.h:6, from RTMB.cpp:1: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RTMB_tape.cpp -o RTMB_tape.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from RTMB.h:6, from RTMB_tape.cpp:1: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from RTMB.h:6, from RcppExports.cpp:5: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c TMB.cpp -o TMB.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from TMB.cpp:2: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c distributions.cpp -o distributions.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from RTMB.h:6, from distributions.cpp:2: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c interpol.cpp -o interpol.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from RTMB.h:6, from interpol.cpp:2: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c math.cpp -o math.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from RTMB.h:6, from math.cpp:4: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c math_complex.cpp -o math_complex.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from RTMB.h:6, from math_complex.cpp:13: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c misc.cpp -o misc.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from RTMB.h:6, from misc.cpp:2: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c poshess.cpp -o poshess.o In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:201, from TMB.h:35, from RTMB.h:6, from poshess.cpp:2: /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 221 | nestedTriangle<0>(){} | ^ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:221:22: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 222 | nestedTriangle<0>(Base x) : Base(x){} | ^~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:222:23: note: remove the '< >' /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 223 | nestedTriangle<0>(vector<matrix<double> > args) : Block<double>(args[0]) {} | ^~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/TMB/include/expm.hpp:223:23: note: remove the '< >' g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o RTMB.so RTMB.o RTMB_tape.o RcppExports.o TMB.o distributions.o interpol.o math.o math_complex.o misc.o poshess.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RTMB/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RTMB/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RTMB/src' installing to /data/gannet/ripley/R/packages/tests-devel/RTMB.Rcheck/00LOCK-RTMB/00new/RTMB/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘fft’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dexp’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dweibull’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dbeta’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘df’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dt’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dnbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dgamma’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pgamma’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pexp’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pweibull’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘pbeta’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qgamma’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qexp’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qweibull’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qbeta’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘besselK’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselI’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselJ’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘besselY’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘diag’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘colSums’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dlnorm’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘matrix’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘apply’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘sapply’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘ifelse’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘outer’ from package ‘base’ in package ‘RTMB’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘RTMB’ Creating a generic function for ‘dmultinom’ from package ‘stats’ in package ‘RTMB’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTMB)