* installing *source* package ‘RMVL’ ... ** this is package ‘RMVL’ version ‘1.1.0.2’ ** package ‘RMVL’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RMVL/src' gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c RlibMVL.c -o RlibMVL.o RlibMVL.c: In function ‘remap_library’: RlibMVL.c:223:7: warning: unused variable ‘data’ [-Wunused-variable] 223 | void *data; | ^~~~ RlibMVL.c: In function ‘write_vector’: RlibMVL.c:1850:18: warning: unused variable ‘strvec’ [-Wunused-variable] 1850 | LIBMVL_OFFSET64 *strvec; | ^~~~~~ RlibMVL.c: In function ‘start_write_vector’: RlibMVL.c:2091:18: warning: unused variable ‘strvec’ [-Wunused-variable] 2091 | LIBMVL_OFFSET64 *strvec; | ^~~~~~ RlibMVL.c:2090:19: warning: unused variable ‘strvec2’ [-Wunused-variable] 2090 | const char *ch, **strvec2; | ^~~~~~~ RlibMVL.c: In function ‘rewrite_vector’: RlibMVL.c:2340:18: warning: unused variable ‘strvec’ [-Wunused-variable] 2340 | LIBMVL_OFFSET64 *strvec; | ^~~~~~ RlibMVL.c:2339:19: warning: unused variable ‘strvec2’ [-Wunused-variable] 2339 | const char *ch, **strvec2; | ^~~~~~~ RlibMVL.c: In function ‘write_spatial_groups1’: RlibMVL.c:3652:6: warning: unused variable ‘data’ [-Wunused-variable] 3652 | SEXP data; | ^~~~ RlibMVL.c: In function ‘group_lapply’: RlibMVL.c:5371:26: warning: unused variable ‘stretch_max’ [-Wunused-variable] 5371 | LIBMVL_OFFSET64 N, Nidx, stretch_max; | ^~~~~~~~~~~ gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c libMVL.c -o libMVL.o libMVL.c: In function ‘mvl_write_directory’: libMVL.c:1270:7: warning: unused variable ‘cur’ [-Wunused-variable] 1270 | off_t cur; | ^~~ libMVL.c:1268:18: warning: unused variable ‘p’ [-Wunused-variable] 1268 | LIBMVL_OFFSET64 *p; | ^ libMVL.c: In function ‘mvl_load_image’: libMVL.c:1813:5: warning: unused variable ‘i’ [-Wunused-variable] 1813 | int i; | ^ libMVL.c:1812:17: warning: unused variable ‘k’ [-Wunused-variable] 1812 | LIBMVL_OFFSET64 k; | ^ libMVL.c:1811:22: warning: unused variable ‘a’ [-Wunused-variable] 1811 | LIBMVL_VECTOR *dir, *a; | ^ libMVL.c:1811:16: warning: unused variable ‘dir’ [-Wunused-variable] 1811 | LIBMVL_VECTOR *dir, *a; | ^~~ libMVL.c: In function ‘mvl_indexed_copy_vector’: libMVL.c:581:50: warning: ‘char_offset’ may be used uninitialized [-Wmaybe-uninitialized] 581 | po[i]=char_offset+char_start+sizeof(LIBMVL_VECTOR_HEADER)+k; | ~~~~~~~~~~~^~~~~~~~~~~ libMVL.c:509:25: note: ‘char_offset’ was declared here 509 | LIBMVL_OFFSET64 offset, char_offset; | ^~~~~~~~~~~ g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libMVL_sort.cc -o libMVL_sort.o In file included from libMVL_sort.cc:8: libMVL.h: In function ‘double mvl_as_double(const LIBMVL_VECTOR*, long int)’: libMVL.h:622:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare] 622 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(NAN); | ^ libMVL.h: In function ‘double mvl_as_double_default(const LIBMVL_VECTOR*, long int, double)’: libMVL.h:649:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare] 649 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(def); | ^ libMVL.h: In function ‘LIBMVL_OFFSET64 mvl_as_offset(const LIBMVL_VECTOR*, long int)’: libMVL.h:676:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare] 676 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(0); | ^ g++ -std=gnu++17 -shared -L/usr/local/lib64 -o RMVL.so RlibMVL.o libMVL.o libMVL_sort.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RMVL/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RMVL/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RMVL/src' installing to /data/gannet/ripley/R/packages/tests-devel/RMVL.Rcheck/00LOCK-RMVL/00new/RMVL/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RMVL)