* installing *source* package ‘RMVL’ ...
** this is package ‘RMVL’ version ‘1.1.0.1’
** package ‘RMVL’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RMVL/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c RlibMVL.c -o RlibMVL.o
RlibMVL.c: In function ‘write_vector’:
RlibMVL.c:1692:18: warning: unused variable ‘strvec’ [-Wunused-variable]
1692 | LIBMVL_OFFSET64 *strvec;
| ^~~~~~
RlibMVL.c: In function ‘start_write_vector’:
RlibMVL.c:1933:18: warning: unused variable ‘strvec’ [-Wunused-variable]
1933 | LIBMVL_OFFSET64 *strvec;
| ^~~~~~
RlibMVL.c:1932:19: warning: unused variable ‘strvec2’ [-Wunused-variable]
1932 | const char *ch, **strvec2;
| ^~~~~~~
RlibMVL.c: In function ‘rewrite_vector’:
RlibMVL.c:2182:18: warning: unused variable ‘strvec’ [-Wunused-variable]
2182 | LIBMVL_OFFSET64 *strvec;
| ^~~~~~
RlibMVL.c:2181:19: warning: unused variable ‘strvec2’ [-Wunused-variable]
2181 | const char *ch, **strvec2;
| ^~~~~~~
RlibMVL.c: In function ‘write_spatial_groups1’:
RlibMVL.c:3494:6: warning: unused variable ‘data’ [-Wunused-variable]
3494 | SEXP data;
| ^~~~
RlibMVL.c: In function ‘group_lapply’:
RlibMVL.c:5213:26: warning: unused variable ‘stretch_max’ [-Wunused-variable]
5213 | LIBMVL_OFFSET64 N, Nidx, stretch_max;
| ^~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c libMVL.c -o libMVL.o
libMVL.c: In function ‘mvl_write_directory’:
libMVL.c:884:7: warning: unused variable ‘cur’ [-Wunused-variable]
884 | off_t cur;
| ^~~
libMVL.c:882:18: warning: unused variable ‘p’ [-Wunused-variable]
882 | LIBMVL_OFFSET64 *p;
| ^
libMVL.c: In function ‘mvl_load_image’:
libMVL.c:1405:5: warning: unused variable ‘i’ [-Wunused-variable]
1405 | int i;
| ^
libMVL.c:1404:17: warning: unused variable ‘k’ [-Wunused-variable]
1404 | LIBMVL_OFFSET64 k;
| ^
libMVL.c:1403:22: warning: unused variable ‘a’ [-Wunused-variable]
1403 | LIBMVL_VECTOR *dir, *a;
| ^
libMVL.c:1403:16: warning: unused variable ‘dir’ [-Wunused-variable]
1403 | LIBMVL_VECTOR *dir, *a;
| ^~~
libMVL.c: In function ‘mvl_indexed_copy_vector’:
libMVL.c:548:50: warning: ‘char_offset’ may be used uninitialized [-Wmaybe-uninitialized]
548 | po[i]=char_offset+char_start+sizeof(LIBMVL_VECTOR_HEADER)+k;
| ~~~~~~~~~~~^~~~~~~~~~~
libMVL.c:476:25: note: ‘char_offset’ was declared here
476 | LIBMVL_OFFSET64 offset, char_offset;
| ^~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libMVL_sort.cc -o libMVL_sort.o
In file included from libMVL_sort.cc:8:
libMVL.h: In function ‘double mvl_as_double(const LIBMVL_VECTOR*, long int)’:
libMVL.h:529:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare]
529 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(NAN);
| ^
libMVL.h: In function ‘double mvl_as_double_default(const LIBMVL_VECTOR*, long int, double)’:
libMVL.h:556:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare]
556 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(def);
| ^
libMVL.h: In function ‘LIBMVL_OFFSET64 mvl_as_offset(const LIBMVL_VECTOR*, long int)’:
libMVL.h:583:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare]
583 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(0);
| ^
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o RMVL.so RlibMVL.o libMVL.o libMVL_sort.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RMVL/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RMVL/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RMVL/src'
installing to /data/gannet/ripley/R/packages/tests-devel/RMVL.Rcheck/00LOCK-RMVL/00new/RMVL/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RMVL)