Install log for 'ProbSVMs'

* installing *source* package ‘ProbSVMs’ ...
** this is package ‘ProbSVMs’ version ‘0.1.0’
** package ‘ProbSVMs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ProbSVMs/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Predict.cpp -o Predict.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c TrainCanSVMs.cpp -o TrainCanSVMs.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c TrainSVMs.cpp -o TrainSVMs.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c TuneSVMs.cpp -o TuneSVMs.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c consvmalphatoMat.cpp -o consvmalphatoMat.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c init.cpp -o init.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c makeKMat.cpp -o makeKMat.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c svmModels.cpp -o svmModels.o
svmModels.cpp: In function ‘void WWQ_C(const arma::uvec&, double, const Rcpp::NumericVector&, const arma::vec&, arma::vec&, ARMASVMMatrix&, arma::vec&)’:
svmModels.cpp:153:25: warning: unused variable ‘k’ [-Wunused-variable]
  153 |   int n=grouping.size(),k=w.size();
      |                         ^
TrainCanSVMs.cpp: In function ‘arma::ivec findWrkind(const arma::vec&, double, double, bool, arma::vec&, const arma::vec&, SVMCMatrix*, std::__cxx11::list<int>&, std::__cxx11::list<int>&, std::__cxx11::list<int>&)’:
TrainCanSVMs.cpp:141:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::list<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  141 |     for (int i=0; i<VatUB.size(); it++, i++) {
      |                   ~^~~~~~~~~~~~~
TrainCanSVMs.cpp:154:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::list<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  154 |     for (int i=0; i<VatLB.size(); it++, i++) {
      |                   ~^~~~~~~~~~~~~
TrainCanSVMs.cpp:167:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::list<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  167 |     for (int i=0; i<VatDomInt.size(); it++, i++) {
      |                   ~^~~~~~~~~~~~~~~~~
TrainCanSVMs.cpp:188:10: warning: variable ‘Qaa’ set but not used [-Wunused-but-set-variable]
  188 |   double Qaa, Qbb, Qab, alphab, gb, ub;
      |          ^~~
TrainCanSVMs.cpp:234:26: warning: ‘ub’ may be used uninitialized [-Wmaybe-uninitialized]
  234 |   else if (alphabb >= ub - tol) VatUB.remove(bestb);
      |                       ~~~^~~~~
TrainCanSVMs.cpp:188:37: note: ‘ub’ was declared here
  188 |   double Qaa, Qbb, Qab, alphab, gb, ub;
      |                                     ^~
In file included from TrainSVMs.cpp:3:
TrainSVMs.h: In function ‘bool TrSVMs_C(const arma::uvec&, double, const Ktype&, const arma::mat&, arma::vec&, SVMCMatrix*, arma::vec&, bool, double, int, double, arma::vec&, arma::mat&, double&, int&, int, bool, int, arma::vec) [with Ktype = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
TrainSVMs.h:35:16: warning: ‘ui’ may be used uninitialized [-Wmaybe-uninitialized]
   35 |         Rprintf("Error: Initial alpha(%i) value (= %f) outside of its allowable range given by [0. %f]\n",i,alphai,ui);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TrainSVMs.h:29:19: note: ‘ui’ was declared here
   29 |     double alphai,ui;
      |                   ^~
In file included from TuneSVMs.cpp:3:
TrainSVMs.h: In function ‘bool TrSVMs_C(const arma::uvec&, double, const Ktype&, const arma::mat&, arma::vec&, SVMCMatrix*, arma::vec&, bool, double, int, double, arma::vec&, arma::mat&, double&, int&, int, bool, int, arma::vec) [with Ktype = arma::Mat<double>]’:
TrainSVMs.h:35:16: warning: ‘ui’ may be used uninitialized [-Wmaybe-uninitialized]
   35 |         Rprintf("Error: Initial alpha(%i) value (= %f) outside of its allowable range given by [0. %f]\n",i,alphai,ui);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TrainSVMs.h:29:19: note: ‘ui’ was declared here
   29 |     double alphai,ui;
      |                   ^~
TrainSVMs.h: In function ‘bool TrSVMs_C(const arma::uvec&, double, const Ktype&, const arma::mat&, arma::vec&, SVMCMatrix*, arma::vec&, bool, double, int, double, arma::vec&, arma::mat&, double&, int&, int, bool, int, arma::vec) [with Ktype = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
TrainSVMs.h:35:16: warning: ‘ui’ may be used uninitialized [-Wmaybe-uninitialized]
   35 |         Rprintf("Error: Initial alpha(%i) value (= %f) outside of its allowable range given by [0. %f]\n",i,alphai,ui);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
TrainSVMs.h:29:19: note: ‘ui’ was declared here
   29 |     double alphai,ui;
      |                   ^~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o ProbSVMs.so Predict.o TrainCanSVMs.o TrainSVMs.o TuneSVMs.o consvmalphatoMat.o init.o makeKMat.o svmModels.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ProbSVMs/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ProbSVMs/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ProbSVMs/src'
installing to /data/gannet/ripley/R/packages/tests-devel/ProbSVMs.Rcheck/00LOCK-ProbSVMs/00new/ProbSVMs/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ProbSVMs)