* installing *source* package ‘PRIMAL’ ...
** this is package ‘PRIMAL’ version ‘1.0.3’
** package ‘PRIMAL’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/PRIMAL/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I./include -I./dmlc-core/include  -I.  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c api.cpp -o api.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I./include -I./dmlc-core/include  -I.  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c PSM.cpp -o PSM.o
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/SparseLU:35,
                 from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Sparse:29,
                 from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:29,
                 from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
                 from ./include/PSM/PSM.hpp:7,
                 from PSM.cpp:1:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h: In instantiation of ‘void Eigen::internal::SparseLUImpl<Scalar, StorageIndex>::heap_relax_snode(Eigen::Index, IndexVector&, Eigen::Index, IndexVector&, IndexVector&) [with Scalar = double; StorageIndex = int; Eigen::Index = long int; IndexVector = Eigen::Matrix<int, -1, 1>]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:669:27:   required from ‘void Eigen::SparseLU<_MatrixType, _OrderingType>::factorize(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<double, 0, int>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<double, 0, int>]’
  669 |     Base::heap_relax_snode(n, m_etree, m_perfv.relax, marker, relax_end);
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PSM.cpp:95:19:   required from here
   95 |                 solver.factorize(A_B_sparse);
      |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable ‘nsuper_et_post’ set but not used [-Wunused-but-set-variable=]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
      |         ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable ‘nsuper_et’ set but not used [-Wunused-but-set-variable=]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree
      |         ^~~~~~~~~
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I./include -I./dmlc-core/include  -I.  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o PRIMAL.so ./api.o ./PSM.o ./init.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/PRIMAL/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/PRIMAL/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/PRIMAL/src'
installing to /data/localhost/ripley/R/packages/tests-devel/PRIMAL.Rcheck/00LOCK-PRIMAL/00new/PRIMAL/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PRIMAL)