* installing *source* package ‘PPtreeExt’ ... ** this is package ‘PPtreeExt’ version ‘0.1.0’ ** package ‘PPtreeExt’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/PPtreeExt/src' g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c optim_index.cpp -o optim_index.o optim_index.cpp: In function ‘arma::vec tableC(arma::vec)’: optim_index.cpp:12:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 12 | for(int i = 0; i < values.size(); i++) { | ~~^~~~~~~~~~~~~~~ optim_index.cpp:13:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 13 | for(int j = 0; j < x.size(); j++){ | ~~^~~~~~~~~~ optim_index.cpp: In function ‘arma::vec LDAindex2(arma::vec, arma::mat, arma::mat, bool)’: optim_index.cpp:45:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 45 | for (int k = 0; k < clval.size(); k++) { | ~~^~~~~~~~~~~~~~ optim_index.cpp: In function ‘double PDAindex2(arma::vec, arma::mat, arma::mat, bool, double)’: optim_index.cpp:222:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 222 | for (int k = 0; k < clval.size(); k++) { | ~~^~~~~~~~~~~~~~ optim_index.cpp: In function ‘Rcpp::List findprojwrapMOD(arma::vec, arma::mat, std::string, double, double, bool, bool)’: optim_index.cpp:844:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 844 | for(int i = 0; i < vrnd.size(); i++){ | ~~^~~~~~~~~~~~~ optim_index.cpp:889:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 889 | for(int j = 0; j< projdata.size(); j++){ | ~^~~~~~~~~~~~~~~~~ optim_index.cpp:902:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 902 | for(int i = 0; i < classe.size(); i++){ | ~~^~~~~~~~~~~~~~~ optim_index.cpp: In function ‘arma::vec boot(arma::mat, arma::mat)’: optim_index.cpp:1195:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1195 | for (int k = 0; k < clval.size(); k++) { | ~~^~~~~~~~~~~~~~ optim_index.cpp: In function ‘arma::vec trainfn(arma::mat, arma::mat, double)’: optim_index.cpp:1216:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1216 | for (int k = 0; k < clval.size(); k++) { | ~~^~~~~~~~~~~~~~ optim_index.cpp: In function ‘arma::mat proximi(arma::mat, int)’: optim_index.cpp:1232:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1232 | for(int k = 0; k < predtr.n_cols; k++) { | ~~^~~~~~~~~~~~~~~ optim_index.cpp:1234:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1234 | for(int i = 0; i < predtr.n_rows; i++) { | ~~^~~~~~~~~~~~~~~ optim_index.cpp: In function ‘arma::vec mvote(arma::mat)’: optim_index.cpp:1252:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1252 | for(int k = 0; k < clval.size() ; k++) { | ~~^~~~~~~~~~~~~~ optim_index.cpp:1253:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1253 | for(int j=0; j< votes.n_cols ;j++){ | ~^~~~~~~~~~~~~~ optim_index.cpp:1254:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1254 | for(int i=0; i < votes.n_rows; i++) { | ~~^~~~~~~~~~~~~~ optim_index.cpp:1263:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1263 | for(int i = 0; i < votes.n_cols; i++) { | ~~^~~~~~~~~~~~~~ optim_index.cpp: In function ‘arma::mat mvoteoob(arma::mat, arma::mat)’: optim_index.cpp:1311:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1311 | for(int j=0; j< votes.n_cols ;j++){ //obs | ~^~~~~~~~~~~~~~ optim_index.cpp:1312:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1312 | for(int i=0; i < votes.n_rows; i++) {//trees | ~~^~~~~~~~~~~~~~ optim_index.cpp:1313:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1313 | for(int k = 0; k < clval.size() ; k++) { | ~~^~~~~~~~~~~~~~ optim_index.cpp:1323:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1323 | for(int j = 0; j < votes.n_cols; j++) { | ~~^~~~~~~~~~~~~~ optim_index.cpp: In function ‘arma::vec ooberrortree(arma::mat, arma::mat, arma::vec, int)’: optim_index.cpp:1337:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1337 | for(int i=0; i < votes.n_rows; i++) {//trees | ~~^~~~~~~~~~~~~~ optim_index.cpp:1340:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1340 | for(int j=0; j< votes.n_cols ;j++){ //obs | ~^~~~~~~~~~~~~~ optim_index.cpp: In function ‘Rcpp::List PPclassification(arma::mat, arma::mat, arma::vec, arma::vec, int, int)’: optim_index.cpp:1372:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1372 | for(int i = 0; i< iclass.size(); i++){ | ~^~~~~~~~~~~~~~~ optim_index.cpp:1382:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1382 | for(int i=0; i< IOindex.size(); i++){ | ~^~~~~~~~~~~~~~~~ optim_index.cpp: In function ‘Rcpp::List PPclassindex(arma::vec, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, int, int)’: optim_index.cpp:1454:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1454 | for(int i=0; i< classtemp.size(); i++){ | ~^~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -shared -L/usr/local/lib64 -o PPtreeExt.so RcppExports.o optim_index.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/PPtreeExt/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/PPtreeExt/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/PPtreeExt/src' installing to /data/gannet/ripley/R/packages/tests-devel/PPtreeExt.Rcheck/00LOCK-PPtreeExt/00new/PPtreeExt/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PPtreeExt)