- using R Under development (unstable) (2026-01-28 r89342)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘OmopViewer/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘OmopViewer’ version ‘0.6.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘OmopViewer’ can be installed ... [10s/22s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s/31s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [31s/74s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [61s/98s] ERROR
Running ‘testthat.R’ [60s/97s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpTJryN3/shiny
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpTJryN3/shiny
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpTJryN3/shiny
> test-appStatic.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpazxEp6/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpazxEp6/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `result_type`, `package_name`, and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpazxEp6/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpazxEp6/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpazxEp6/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpazxEp6/shiny
> test-appStatic.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: i Processing data
> test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/RtmpYJAlWZ/working_dir/RtmpazxEp6/shiny
Saving _problems/test-appStatic-186.R
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:1:1',
'test-appStatic.R:37:1', 'test-appStatic.R:51:1', 'test-appStatic.R:71:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:183:3'): theme ─────────────────────────────────────
Error in `check_list(typography, brand_typography_prototype(), path = "typography")`: Unexpected fields in typography: "base-font-size", "table", "table-font-size", "plot", and "plot-font-size"
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:183:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bslib::bs_theme(brand = validateTheme(NULL))
5. ├─bslib:::brand_resolve(brand)
6. └─bslib:::brand_resolve.list(brand)
7. ├─brand.yml::as_brand_yml(brand)
8. └─brand.yml:::as_brand_yml.list(brand)
9. └─brand.yml:::brand_typography_normalize(brand)
10. └─brand.yml:::brand_typography_check(brand$typography)
11. └─brand.yml:::check_list(typography, brand_typography_prototype(), path = "typography")
12. └─cli::cli_abort("Unexpected fields in {.field {field_path}}: {.val {extra_items}}")
13. └─rlang::abort(...)
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 65 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [56s/148s] OK
- checking PDF version of manual ... [7s/16s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR