- using R Under development (unstable) (2026-06-19 r90183)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
* current time: 2026-06-20 18:10:57 UTC
- using option ‘--no-stop-on-test-error’
- checking for file ‘OmopViewer/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘OmopViewer’ version ‘0.7.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... INFO
Package suggested but not available for checking: ‘shiny.fluent’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘OmopViewer’ can be installed ... [10s/13s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s/16s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [9s/10s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [62s/46s] ERROR
Running ‘testthat.R’ [62s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes.
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/RtmptaDXdf/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/Rtmpok02sH/shiny
> test-appStatic.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/RtmptaDXdf/shiny
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/Rtmpok02sH/shiny
> test-background.R: i Processing data
> test-background.R: ! No panels identified, generated shiny will be empty.
> test-background.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/RtmptaDXdf/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-background.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/Rtmpok02sH/shiny
> test-appStatic.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/RtmptaDXdf/shiny
> test-appStatic.R: trying URL 'https://www.ema.europa.eu/sites/default/files/styles/oe_bootstrap_theme_medium_no_crop/public/2024-07/DARWINEU_logo_LARGE.png?itok=NtwlLhSX'
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/RtmptaDXdf/shiny
> test-appStatic.R: i Processing data
> test-appStatic.R: ! No panels identified, generated shiny will be empty.
> test-appStatic.R: i Creating `shiny` from provided data
> test-appStatic.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/RtmptaDXdf/shiny
> test-summary.R: `result_type`, `package_name`, and `package_version` added to settings.
> test-appStatic.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: i Processing data
> test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`.
> test-appStatic.R: i Creating `shiny` from provided data
> test-summary.R: `package_name` and `package_version` added to settings.
> test-appStatic.R: v Shiny created in: /tmp/Rtmpfb4Clj/working_dir/RtmptaDXdf/shiny
Saving _problems/test-appStatic-41.R
[ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (4): 'test-packagesSupported.R:2:3', 'test-appStatic.R:46:1',
'test-appStatic.R:60:1', 'test-appStatic.R:80:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-appStatic.R:41:3'): logo ───────────────────────────────────────
Error in `utils::download.file(url = url, destfile = tf, mode = "wb")`: cannot open URL 'https://www.ema.europa.eu/sites/default/files/styles/oe_bootstrap_theme_medium_no_crop/public/2024-07/DARWINEU_logo_LARGE.png?itok=NtwlLhSX'
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-appStatic.R:41:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─OmopViewer:::copyLogos(logo = logo, directory = tdir)
5. └─OmopViewer:::downloadLogo(url = logo, directory = directory)
6. └─utils::download.file(url = url, destfile = tf, mode = "wb")
[ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [105s/137s] OK
- checking PDF version of manual ... [7s/12s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR