• using R Under development (unstable) (2026-04-28 r89972)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)     GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-04-29 01:12:14 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘OmopStudyBuilder/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘OmopStudyBuilder’ version ‘0.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘OmopStudyBuilder’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [44s/56s] ERROR   Running ‘testthat.R’ [44s/56s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(OmopStudyBuilder)   >   > test_check("OmopStudyBuilder")   Saving _problems/test-linkGitHub-203.R               [22/62] [23/62] [24/62] [25/62] [26/62] [27/62] [28/62] [29/62] [30/62] [31/62] [32/62] [33/62] [34/62] [35/62] [36/62] [37/62] [38/62] [39/62] [40/62] [41/62] [42/62] [43/62] [44/62] [45/62] [46/62] [47/62] [48/62] [49/62] [50/62] [51/62] [52/62] [53/62] [54/62] [55/62] [56/62] [57/62] [58/62] [59/62] [60/62] [61/62] [62/62]                                    [ FAIL 1 | WARN 0 | SKIP 15 | PASS 90 ]      ══ Skipped tests (15) ══════════════════════════════════════════════════════════   • Integration test - requires built image (1): 'test-dockerWrapper.R:99:3'   • Integration test - requires built image and config file (1):     'test-dockerWrapper.R:107:3'   • Integration test - requires built image and test script (3):     'test-dockerWrapper.R:103:3', 'test-dockerWrapper.R:111:3',     'test-dockerWrapper.R:115:3'   • Integration test - requires built rstudio image (4):     'test-dockerWrapper.R:65:3', 'test-dockerWrapper.R:69:3',     'test-dockerWrapper.R:73:3', 'test-dockerWrapper.R:77:3'   • Integration test - requires running container (2):     'test-dockerWrapper.R:85:3', 'test-dockerWrapper.R:89:3'   • Integration test - requires valid renv project (2):     'test-dockerWrapper.R:53:3', 'test-dockerWrapper.R:57:3'   • Manual test - set RUN_MANUAL_TESTS=true to run (requires GITHUB_PAT) (2):     'test-linkGitHub.R:308:3', 'test-linkGitHub.R:342:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-linkGitHub.R:200:3'): ensureGitIdentity errors when git identity is missing and user info is absent ──   Expected `OmopStudyBuilder:::ensureGitIdentity(temp_dir, NULL)` to throw a error.      [ FAIL 1 | WARN 0 | SKIP 15 | PASS 90 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [14s/14s] OK
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR