Install log for 'NMF'

* installing *source* package ‘NMF’ ...
** this is package ‘NMF’ version ‘0.28’
** package ‘NMF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3)’
using C++ compiler: ‘g++ (GCC) 16.2.1 20261029 (Red Hat 16.2.1-3)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/NMF/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c distance.cpp -o distance.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c divergence.cpp -o divergence.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c euclidean.cpp -o euclidean.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utils.cpp -o utils.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o NMF.so distance.o divergence.o euclidean.o registerDynamicSymbol.o utils.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/NMF/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/NMF/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/NMF/src'
installing to /data/localhost/ripley/R/packages/tests-devel/NMF.Rcheck/00LOCK-NMF/00new/NMF/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Setting package specific options: package:NMF:logger (1 default option(s))
Setting package specific options: package:NMF (10 default option(s))
creating formal generic function 'fitted' in package 'NMF'
  using implicit definition in package 'stats'
creating formal generic function 'loadings' in package 'NMF'
  using implicit definition in package 'stats'
creating formal generic function 'coef' in package 'NMF'
  using implicit definition in package 'stats'
creating formal generic function 'coefficients' in package 'NMF'
  using implicit definition in package 'stats'
creating formal generic function '.DollarNames' in package 'NMF'
  using implicit definition in package 'utils'
creating formal generic function 'summary' in package 'NMF'
creating formal generic function 'predict' in package 'NMF'
  using implicit definition in package 'stats'
creating formal generic function 'deviance' in package 'NMF'
  using implicit definition in package 'stats'
creating formal generic function 'offset' in package 'NMF'
  using implicit definition in package 'stats'
creating formal generic function 'residuals' in package 'NMF'
  using implicit definition in package 'stats'
creating formal generic function 'plot' in package 'NMF'
  using implicit definition in package 'graphics'
creating formal generic function 'getRNG1' in package 'NMF'
  using implicit definition in package 'rngtools'
creating formal generic function '.getRNG' in package 'NMF'
  using implicit definition in package 'rngtools'
Creating meta registry in package 'NMF' ... OK
Creating registry 'extra_handler' in package 'NMF' ... OK
Creating registry 'extra_action' in package 'NMF' ... OK
Registering extra handler 'install.packages' [function] ... OK
Creating registry 'algorithm' in package 'NMF' ... OK
Registering NMF algorithm '.R#brunet' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'brunet' [NMFStrategyIterative] based on template '.R#brunet' ... OK
Registering NMF algorithm 'KL' [NMFStrategyIterative] ... OK
Registering NMF algorithm '.R#lee' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'lee' [NMFStrategyIterative] based on template '.R#lee' ... OK
Registering NMF algorithm 'Frobenius' [NMFStrategyIterative] ... OK
Registering NMF algorithm '.R#offset' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'offset' [NMFStrategyIterative] based on template '.R#offset' ... OK
Registering NMF algorithm '.R#nsNMF' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'nsNMF' [NMFStrategyIterative] based on template '.R#nsNMF' ... OK
Registering NMF algorithm 'ls-nmf' [NMFStrategyIterative] ... OK
Registering NMF algorithm 'pe-nmf' [NMFStrategyIterative] ... OK
Registering NMF algorithm '.siNMF' [NMFStrategyIterative] based on template 'lee' ... OK
Registering NMF algorithm 'siNMF' [NMFStrategyIterative] based on template 'lee' ... OK
Registering NMF algorithm 'snmf/r' [NMFStrategyFunction] ... OK
Registering NMF algorithm 'snmf/l' [NMFStrategyFunction] ... OK
Registering extra action 'bigmemory' for handler 'install.packages' ... OK
Registering extra action 'synchronicity' for handler 'install.packages' ... OK
Creating registry 'seed' in package 'NMF' ... OK
Registering NMF seeding method 'none' [NMFSeed] ... OK
Registering NMF seeding method 'random' [NMFSeed] ... OK
Registering NMF seeding method 'ica' [NMFSeed] ... OK
Registering NMF seeding method 'nndsvd' [NMFSeed] ... OK
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
creating formal generic function 'featureNames' in package 'NMF'
  using implicit definition in package 'Biobase'
creating formal generic function 'featureNames<-' in package 'NMF'
  using implicit definition in package 'Biobase'
creating formal generic function 'sampleNames' in package 'NMF'
  using implicit definition in package 'Biobase'
creating formal generic function 'sampleNames<-' in package 'NMF'
  using implicit definition in package 'Biobase'
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
creating formal generic function 'featureNames' in package 'NMF'
  using implicit definition in package 'Biobase'
creating formal generic function 'featureNames<-' in package 'NMF'
  using implicit definition in package 'Biobase'
creating formal generic function 'sampleNames' in package 'NMF'
  using implicit definition in package 'Biobase'
creating formal generic function 'sampleNames<-' in package 'NMF'
  using implicit definition in package 'Biobase'
** testing if installed package keeps a record of temporary installation path
* DONE (NMF)