* installing *source* package ‘MultOrdRS’ ...
** this is package ‘MultOrdRS’ version ‘0.1-3’
** package ‘MultOrdRS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/MultOrdRS/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cppMultOrd.cpp -o cppMultOrd.o
cppMultOrd.cpp: In function ‘double loglikMO(arma::vec, arma::vec, arma::mat, int, int, int, int, int, int, int, int, int, int, arma::mat, arma::vec, int, arma::mat, int, double)’:
cppMultOrd.cpp:389:43: warning: ‘-’ operator for reductions deprecated in OpenMP 5.2 [-Wdeprecated-openmp]
389 | #pragma omp parallel for reduction(-:f)
| ^
| +
cppMultOrd.cpp: In function ‘double loglikMO_noRS(arma::vec, arma::vec, arma::mat, int, int, int, int, int, int, int, int, arma::vec, arma::vec, arma::mat, int, double)’:
cppMultOrd.cpp:478:36: warning: ‘-’ operator for reductions deprecated in OpenMP 5.2 [-Wdeprecated-openmp]
478 | #pragma omp parallel for reduction(-:f)
| ^
| +
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o MultOrdRS.so RcppExports.o cppMultOrd.o registerDynamicSymbol.o -llapack -L/data/localhost/ripley/R/R-devel/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -fopenmp
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/MultOrdRS/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/MultOrdRS/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/MultOrdRS/src'
installing to /data/localhost/ripley/R/packages/tests-devel/MultOrdRS.Rcheck/00LOCK-MultOrdRS/00new/MultOrdRS/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MultOrdRS)