* installing *source* package ‘MicrobiomeStat’ ...
** this is package ‘MicrobiomeStat’ version ‘1.3’
** package ‘MicrobiomeStat’ successfully unpacked and MD5 sums checked
** using staged installation
Checking for NLopt library...
NLopt found in /usr
Configuration complete.
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MicrobiomeStat/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -I/usr/include -DHAVE_NLOPT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ADMM.cpp -o ADMM.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -I/usr/include -DHAVE_NLOPT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -I/usr/include -DHAVE_NLOPT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bmdd_nlopt.cpp -o bmdd_nlopt.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -I/usr/include -DHAVE_NLOPT -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c nlopt_check.cpp -o nlopt_check.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o MicrobiomeStat.so ADMM.o RcppExports.o bmdd_nlopt.o nlopt_check.o -L/usr/lib -lnlopt
/usr/bin/ld: skipping incompatible /usr/lib/libnlopt.so when searching for -lnlopt
/usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MicrobiomeStat/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MicrobiomeStat/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MicrobiomeStat/src'
installing to /data/gannet/ripley/R/packages/tests-devel/MicrobiomeStat.Rcheck/00LOCK-MicrobiomeStat/00new/MicrobiomeStat/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MicrobiomeStat)