• using R Under development (unstable) (2025-09-16 r88840)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘MiMIR/DESCRIPTION’ ... OK
• this is package ‘MiMIR’ version ‘1.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘MiMIR’ can be installed ... [35s/291s] OK See the install log for details.
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [9s/59s] OK
• checking whether the package can be loaded with stated dependencies ... [8s/62s] OK
• checking whether the package can be unloaded cleanly ... [8s/72s] OK
• checking whether the namespace can be loaded with stated dependencies ... [8s/48s] OK
• checking whether the namespace can be unloaded cleanly ... [9s/61s] OK
• checking loading without being on the library search path ... [9s/85s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [46s/352s] OK
• checking Rd files ... [1s/12s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [13s/119s] ERROR Running examples in ‘MiMIR-Ex.R’ failed The error most likely occurred in: > ### Name: MetaboWAS > ### Title: MetaboWAS > ### Aliases: MetaboWAS > > ### ** Examples > > require(MiMIR) > require(plotly) Loading required package: plotly Loading required package: ggplot2 Attaching package: ‘plotly’ The following object is masked from ‘package:ggplot2’:     last_plot The following object is masked from ‘package:stats’:     filter The following object is masked from ‘package:graphics’:     layout > require(ggplot2) > > #' #load the dataset > metabolic_measures <- synthetic_metabolic_dataset > phenotypes <- synthetic_phenotypic_dataset > > #Computing a MetaboWAS for age corrected by sex > MetaboWAS(met=metabolic_measures, pheno=phenotypes, test_variable="age", covariates= "sex") Error in `ggplot2::scale_y_continuous()`: ! `limits` must be a vector of length 2, not length 7. Backtrace:     ▆  1. └─MiMIR::MetaboWAS(...)  2. └─ggplot2::scale_y_continuous(expand = c(0, 0), limits = c(0, ylim))  3. └─ggplot2::continuous_scale(...)  4. └─ggplot2:::check_continuous_limits(limits, call = call)  5. └─ggplot2:::check_length(limits, 2L, arg = arg, call = call)  6. └─cli::cli_abort(msg, call = call, arg = arg)  7. └─rlang::abort(...) Execution halted
• checking PDF version of manual ... [11s/100s] OK
• checking HTML version of manual ... [3s/36s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR