* installing *source* package ‘MethScope’ ... ** this is package ‘MethScope’ version ‘1.0.0’ ** package ‘MethScope’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MethScope/src' gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c bgzf.c -o bgzf.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cfile.c -o cfile.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c decompress.c -o decompress.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c format.c -o format.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c format2.c -o format2.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c format3.c -o format3.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c format6.c -o format6.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c format7.c -o format7.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c index.c -o index.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c kstring.c -o kstring.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DBUILDING_R -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c summary.c -o summary.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o MethScope.so bgzf.o cfile.o decompress.o format.o format2.o format3.o format6.o format7.o index.o init.o kstring.o summary.o -lncurses -lz -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MethScope/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MethScope/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MethScope/src' installing to /data/gannet/ripley/R/packages/tests-devel/MethScope.Rcheck/00LOCK-MethScope/00new/MethScope/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MethScope)