* installing *source* package ‘MSCA’ ...
** this is package ‘MSCA’ version ‘1.2.1’
** package ‘MSCA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MSCA/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include    -DRCPP_PARALLEL_USE_TBB=1 -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include    -DRCPP_PARALLEL_USE_TBB=1 -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c block_jack.cpp -o block_jack.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include    -DRCPP_PARALLEL_USE_TBB=1 -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c make_state_matrix.cpp -o make_state_matrix.o
make_state_matrix.cpp: In function ‘Rcpp::NumericMatrix make_state_matrix_rcpp(Rcpp::DataFrame, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, int, int, int)’:
make_state_matrix.cpp:23:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   23 |     for (int i = 0; i < id.size(); ++i)
      |     ^~~
make_state_matrix.cpp:27:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   27 |       NumericMatrix mat(n_time, n_ltc);
      |       ^~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include    -DRCPP_PARALLEL_USE_TBB=1 -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c upper_jack.cpp -o upper_jack.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o MSCA.so RcppExports.o block_jack.o make_state_matrix.o upper_jack.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MSCA/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MSCA/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MSCA/src'
installing to /data/gannet/ripley/R/packages/tests-devel/MSCA.Rcheck/00LOCK-MSCA/00new/MSCA/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MSCA)