* installing *source* package ‘MMVBVS’ ...
** package ‘MMVBVS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MMVBVS/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mmvbvs.cpp -o mmvbvs.o
mmvbvs.cpp: In function 'arma::mat em_with_zero_mean_c(arma::mat, int)':
mmvbvs.cpp:107:40: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  107 |       if (0 < ind.size() && ind.size() < p){
      |                             ~~~~~~~~~~~^~~
mmvbvs.cpp: In function 'Rcpp::List update_h_c(double, int, arma::vec, arma::vec, arma::mat, arma::vec, int)':
mmvbvs.cpp:399:21: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
  399 |     for (int j=0; j < ind.size(); ++j){
      |                   ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o MMVBVS.so RcppExports.o mmvbvs.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MMVBVS/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MMVBVS/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MMVBVS/src'
installing to /data/gannet/ripley/R/packages/tests-devel/MMVBVS.Rcheck/00LOCK-MMVBVS/00new/MMVBVS/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MMVBVS)