* installing *source* package ‘LibOPF’ ... ** package ‘LibOPF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (GCC) 14.1.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/LibOPF/src' gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_split.c -o code/opf_split.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_accuracy.c -o code/opf_accuracy.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_accuracy4label.c -o code/opf_accuracy4label.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_train.c -o code/opf_train.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_semi.c -o code/opf_semi.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_classify.c -o code/opf_classify.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_learn.c -o code/opf_learn.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_distance.c -o code/opf_distance.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_info.c -o code/opf_info.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_fold.c -o code/opf_fold.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_merge.c -o code/opf_merge.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_cluster.c -o code/opf_cluster.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_pruning.c -o code/opf_pruning.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opf_normalize.c -o code/opf_normalize.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opfknn_train.c -o code/opfknn_train.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c code/opfknn_classify.c -o code/opfknn_classify.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tools/src/txt2opf.c -o tools/src/txt2opf.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tools/src/opf2txt.c -o tools/src/opf2txt.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tools/src/opf_check.c -o tools/src/opf_check.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tools/src/opf2svm.c -o tools/src/opf2svm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tools/src/svm2opf.c -o tools/src/svm2opf.o gcc-14 -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -c ./code/util/common.c -o ./code/util/common.o -fPIC gcc-14 -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -c ./code/util/set.c -o ./code/util/set.o -fPIC gcc-14 -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -c ./code/util/gqueue.c -o ./code/util/gqueue.o -fPIC gcc-14 -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -c ./code/util/realheap.c -o ./code/util/realheap.o -fPIC gcc-14 -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -c ./code/util/sgctree.c -o ./code/util/sgctree.o -fPIC gcc-14 -O3 -Wall -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -c ./code/util/subgraph.c -o ./code/util/subgraph.o -fPIC gcc-14 -O3 -Wall -c ./code/OPF.c -I./include -I./include/util -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -o ./code/util/OPF.o -fPIC gcc-ar csr ./include/libOPF.a \ ./code/util/common.o \ ./code/util/set.o \ ./code/util/gqueue.o \ ./code/util/realheap.o \ ./code/util/sgctree.o \ ./code/util/subgraph.o \ ./code/util/OPF.o \ echo "libOPF.a built..." libOPF.a built... gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o LibOPF.so code/opf_split.o code/opf_accuracy.o code/opf_accuracy4label.o code/opf_train.o code/opf_semi.o code/opf_classify.o code/opf_learn.o code/opf_distance.o code/opf_info.o code/opf_fold.o code/opf_merge.o code/opf_cluster.o code/opf_pruning.o code/opf_normalize.o code/opfknn_train.o code/opfknn_classify.o init.o tools/src/txt2opf.o tools/src/opf2txt.o tools/src/opf_check.o tools/src/opf2svm.o tools/src/svm2opf.o -L././include -lOPF -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/LibOPF/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/LibOPF/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/LibOPF/src' installing to /data/gannet/ripley/R/packages/tests-devel/LibOPF.Rcheck/00LOCK-LibOPF/00new/LibOPF/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LibOPF)