* installing *source* package ‘LassoHiDFastGibbs’ ... ** this is package ‘LassoHiDFastGibbs’ version ‘0.1.5’ ** package ‘LassoHiDFastGibbs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/LassoHiDFastGibbs/src' g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c LassoHiDFastGibbs-package.cpp -o LassoHiDFastGibbs-package.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c LassoHiDFastGibbs.cpp -o LassoHiDFastGibbs.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c blasso_2bg.cpp -o blasso_2bg.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c blasso_gibbs_hans.cpp -o blasso_gibbs_hans.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lasso_distribution.cpp -o lasso_distribution.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lm_penalized_gibbs.cpp -o lm_penalized_gibbs.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lm_penalized_nested_gibbs.cpp -o lm_penalized_nested_gibbs.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lm_penalized_pcg.cpp -o lm_penalized_pcg.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rao_blackwell_densities.cpp -o rao_blackwell_densities.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rinvgaussian.cpp -o rinvgaussian.o lm_penalized_nested_gibbs.cpp: In function ‘Rcpp::List lm_penalized_nested_gibbs(const arma::vec&, const arma::mat&, Rcpp::String, const double&, const double&, const double&, const double&, const int&, const double&, const arma::vec&, const int&, const double&, const double&, int, int)’: lm_penalized_nested_gibbs.cpp:202:57: warning: ‘sigma2’ may be used uninitialized [-Wmaybe-uninitialized] 202 | vu = sqrt(sigma2/lambda2)*(va_invsqrt % randn(p)); // O(p) | ^ lm_penalized_nested_gibbs.cpp:103:10: note: ‘sigma2’ was declared here 103 | double sigma2; | ^~~~~~ In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:667, from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:32, from lm_penalized_nested_gibbs.cpp:10: In constructor ‘arma::eOp::eOp(const T1&, typename T1::elem_type) [with T1 = arma::Col; eop_type = arma::eop_scalar_times]’, inlined from ‘typename arma::enable_if2::value, const arma::eOp >::result arma::operator*(typename T1::elem_type, const T1&) [with T1 = Col]’ at /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/operator_times.hpp:47:39, inlined from ‘Rcpp::List lm_penalized_nested_gibbs(const arma::vec&, const arma::mat&, Rcpp::String, const double&, const double&, const double&, const double&, const int&, const double&, const arma::vec&, const int&, const double&, const double&, int, int)’ at lm_penalized_nested_gibbs.cpp:195:55: /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/eOp_meat.hpp:38:5: warning: ‘sigma’ may be used uninitialized [-Wmaybe-uninitialized] 38 | , aux(in_aux) | ^~~~~~~~~~~ lm_penalized_nested_gibbs.cpp: In function ‘Rcpp::List lm_penalized_nested_gibbs(const arma::vec&, const arma::mat&, Rcpp::String, const double&, const double&, const double&, const double&, const int&, const double&, const arma::vec&, const int&, const double&, const double&, int, int)’: lm_penalized_nested_gibbs.cpp:104:10: note: ‘sigma’ was declared here 104 | double sigma; | ^~~~~ g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c slice_samplers.cpp -o slice_samplers.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppNumerical/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c zeta.cpp -o zeta.o slice_samplers.cpp: In function ‘double slice_orthogonal(double, arma::vec, arma::vec, double, double, double, double, double, double, double)’: slice_samplers.cpp:204:35: warning: ‘x_star’ may be used uninitialized [-Wmaybe-uninitialized] 204 | double f_star = f_fun_orthogonal(x_star, vs2, vc2, a_til, b, u_til, v, yTy); num_fun_evals ++; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ slice_samplers.cpp:179:10: note: ‘x_star’ was declared here 179 | double x_star; | ^~~~~~ In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:435, from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:32, from slice_samplers.cpp:3: In function ‘void arma::arma_check(bool, const T1&) [with T1 = char [66]]’, inlined from ‘arma::vec arma::randu(uword, const distr_param&)’ at /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_randu.hpp:122:23, inlined from ‘double slice_orthogonal(double, arma::vec, arma::vec, double, double, double, double, double, double, double)’ at slice_samplers.cpp:289:34: /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/debug.hpp:434:3: warning: ‘xL’ may be used uninitialized [-Wmaybe-uninitialized] 434 | if(state) { arma_stop_logic_error(arma_str::str_wrapper(x)); } | ^~ slice_samplers.cpp: In function ‘double slice_orthogonal(double, arma::vec, arma::vec, double, double, double, double, double, double, double)’: slice_samplers.cpp:230:10: note: ‘xL’ was declared here 230 | double xL; | ^~ In function ‘void arma::arma_check(bool, const T1&) [with T1 = char [66]]’, inlined from ‘arma::vec arma::randu(uword, const distr_param&)’ at /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_randu.hpp:122:23, inlined from ‘double slice_orthogonal(double, arma::vec, arma::vec, double, double, double, double, double, double, double)’ at slice_samplers.cpp:289:34: /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/debug.hpp:434:3: warning: ‘xR’ may be used uninitialized [-Wmaybe-uninitialized] 434 | if(state) { arma_stop_logic_error(arma_str::str_wrapper(x)); } | ^~ slice_samplers.cpp: In function ‘double slice_orthogonal(double, arma::vec, arma::vec, double, double, double, double, double, double, double)’: slice_samplers.cpp:231:10: note: ‘xR’ was declared here 231 | double xR; | ^~ g++ -std=gnu++17 -shared -L/usr/local/lib64 -o LassoHiDFastGibbs.so LassoHiDFastGibbs-package.o LassoHiDFastGibbs.o RcppExports.o blasso_2bg.o blasso_gibbs_hans.o lasso_distribution.o lm_penalized_gibbs.o lm_penalized_nested_gibbs.o lm_penalized_pcg.o rao_blackwell_densities.o rinvgaussian.o slice_samplers.o zeta.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/LassoHiDFastGibbs/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/LassoHiDFastGibbs/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/LassoHiDFastGibbs/src' installing to /data/gannet/ripley/R/packages/tests-devel/LassoHiDFastGibbs.Rcheck/00LOCK-LassoHiDFastGibbs/00new/LassoHiDFastGibbs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LassoHiDFastGibbs)