* installing *source* package ‘Langevin’ ... ** this is package ‘Langevin’ version ‘1.3.2’ ** package ‘Langevin’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Langevin/src' g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Langevin1D.cpp -o Langevin1D.o Langevin1D.cpp: In function ‘Rcpp::List Langevin1D(const arma::vec&, const int&, const arma::vec&, const double&, const int&, int)’: Langevin1D.cpp:75:70: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 75 | if(data(n) >= U(i) && data(n) < U(i+1) && arma::is_finite(data(n))) { | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:518, from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:32, from Langevin1D.cpp:19: /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ Langevin1D.cpp:77:39: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 77 | if(arma::is_finite(data(n+steps(s)))) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Langevin2D.cpp -o Langevin2D.o Langevin2D.cpp: In function ‘Rcpp::List Langevin2D(const arma::mat&, const int&, const arma::vec&, const double&, const int&, int)’: Langevin2D.cpp:68:129: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 68 | if(data(n,0) >= U(i,0) && data(n,0) < U(i+1,0) && data(n,1) >= U(j,1) && data(n,1) < U(j+1,1) && arma::is_finite(data(n,0)) && arma::is_finite(data(n,1))) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:518, from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:32, from Langevin2D.cpp:19: /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ Langevin2D.cpp:68:159: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 68 | if(data(n,0) >= U(i,0) && data(n,0) < U(i+1,0) && data(n,1) >= U(j,1) && data(n,1) < U(j+1,1) && arma::is_finite(data(n,0)) && arma::is_finite(data(n,1))) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ Langevin2D.cpp:70:43: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 70 | if(arma::is_finite(data(n+steps(s),0)) && arma::is_finite(data(n+steps(s),1))) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ Langevin2D.cpp:70:82: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 70 | if(arma::is_finite(data(n+steps(s),0)) && arma::is_finite(data(n+steps(s),1))) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c kernel1D.cpp -o kernel1D.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c timeseries1D.cpp -o timeseries1D.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c timeseries2D.cpp -o timeseries2D.o g++ -std=gnu++17 -shared -L/usr/local/lib64 -o Langevin.so Langevin1D.o Langevin2D.o RcppExports.o kernel1D.o timeseries1D.o timeseries2D.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Langevin/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Langevin/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Langevin/src' installing to /data/gannet/ripley/R/packages/tests-devel/Langevin.Rcheck/00LOCK-Langevin/00new/Langevin/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Langevin)