* installing *source* package ‘KODAMA’ ...
** this is package ‘KODAMA’ version ‘3.0’
** package ‘KODAMA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/KODAMA/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rnanoflann/include' -I'/data/gannet/ripley/R/R-devel/library/Matrix/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rnanoflann/include' -I'/data/gannet/ripley/R/R-devel/library/Matrix/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c irlba.c -o irlba.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I. -IANN -DRANN -DARMA_64BIT_WORD=1 -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/Rnanoflann/include' -I'/data/gannet/ripley/R/R-devel/library/Matrix/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c prova.cpp -o prova.o
prova.cpp: In function ‘arma::ivec PLSDACV_simpls(arma::mat, arma::ivec, arma::ivec, int)’:
prova.cpp:465:22: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = long long unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  465 |     min_val = v22.max(index);
      |               ~~~~~~~^~~~~~~
In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:201,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:32,
                 from prova.cpp:19:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:56: note: declared here
  545 |   [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
      |                                                        ^~~
prova.cpp: In function ‘arma::ivec PLSDACV_fastpls(arma::mat, arma::ivec, arma::ivec, int)’:
prova.cpp:528:22: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = long long unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  528 |     min_val = v22.max(index);
      |               ~~~~~~~^~~~~~~
In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:692:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7850:1: note: declared here
 7850 | Mat<eT>::max(uword& index_of_max_val) const
      | ^~~~~~~
prova.cpp: In function ‘Rcpp::List corecpp(arma::mat, arma::mat, arma::ivec, int, int, int, arma::ivec, Rcpp::NumericVector, bool, int)’:
prova.cpp:676:26: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = long long unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  676 |         min_val = v22.max(index);
      |                   ~~~~~~~^~~~~~~
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7850:1: note: declared here
 7850 | Mat<eT>::max(uword& index_of_max_val) const
      | ^~~~~~~
prova.cpp:693:26: warning: ‘eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = long long unsigned int]’ is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  693 |         min_val = v22.max(index);
      |                   ~~~~~~~^~~~~~~
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7850:1: note: declared here
 7850 | Mat<eT>::max(uword& index_of_max_val) const
      | ^~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o KODAMA.so RcppExports.o irlba.o prova.o -L. -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/KODAMA/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/KODAMA/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/KODAMA/src'
installing to /data/gannet/ripley/R/packages/tests-devel/KODAMA.Rcheck/00LOCK-KODAMA/00new/KODAMA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KODAMA)