• using R Under development (unstable) (2023-11-28 r85644)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-13 (GCC) 13.2.0     GNU Fortran (GCC) 13.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘JuliaConnectoR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘JuliaConnectoR’ version ‘1.1.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘JuliaConnectoR’ can be installed ... [4s/15s] OK See the install log for details.
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/31s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/122s] ERROR Running examples in ‘JuliaConnectoR-Ex.R’ failed The error most likely occurred in: > ### Name: juliaEval > ### Title: Evaluate a Julia expression > ### Aliases: juliaEval > > ### ** Examples > > if (juliaSetupOk()) { + + juliaEval("1 + 2") + juliaEval('using Pkg; Pkg.add("BoltzmannMachines")') + juliaEval('using Random; Random.seed!(5);') + + } Starting Julia ... Error in readLines(con = portfile, n = 1L, ok = FALSE, encoding = "UTF-8") :   too few lines read in readLines Calls: juliaEval ... startJulia -> juliaConnection -> runJuliaServer -> readLines Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [0m/16m] ERROR   Running ‘testthat.R’ [0m/15m] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(JuliaConnectoR)   > library(utils)   >   > if (juliaSetupOk()) {   + test_check("JuliaConnectoR")   + } else if (Sys.getenv("GITHUB_ACTIONS") == "true") {   + stop("Julia setup on GitHub Actions is not OK")   + }     Activating project at `~/R/packages/tests-devel/JuliaConnectoR.Rcheck/JuliaConnectoR/examples/IndexedTables-Project/1_6`   ┌ Warning: The active manifest file is an older format with no julia version entry. Dependencies may have been resolved with a different julia version.   └ @ nothing /data/gannet/ripley/R/packages/tests-devel/JuliaConnectoR.Rcheck/JuliaConnectoR/examples/IndexedTables-Project/1_6/Manifest.toml:0      Installed IndexedTables ────── v1.0.1      Installed Parsers ──────────── v2.8.0      Installed PooledArrays ─────── v1.4.3      Installed OrderedCollections ─ v1.6.3      Installed Tables ───────────── v1.11.1      Installed PrecompileTools ──── v1.2.0      Installed Preferences ──────── v1.4.1      Installed ChainRulesCore ───── v1.18.0      Installed WeakRefStrings ───── v1.4.2      Installed StatsAPI ─────────── v1.7.0      Installed Compat ───────────── v4.10.0      Installed InverseFunctions ─── v0.1.12      Installed LogExpFunctions ──── v0.3.26      Installed DataStructures ───── v0.18.15      Installed ChangesOfVariables ─ v0.1.8      Installed SortingAlgorithms ── v1.2.0      Installed StatsBase ────────── v0.34.2   Precompiling project...     ✓ InverseFunctions     ✓ PooledArrays     ✓ StatsAPI     ✓ OrderedCollections     ✓ Preferences     ✓ Compat     ✓ PrecompileTools     ✓ ChangesOfVariables     ✓ Tables     ✓ ChainRulesCore     ✓ StructArrays     ✓ DataStructures     ✓ SortingAlgorithms     ✓ LogExpFunctions     ✓ StatsBase     ✓ OnlineStatsBase     ✓ Parsers     ✓ InlineStrings     ✓ WeakRefStrings     ✓ IndexedTables     20 dependencies successfully precompiled in 60 seconds (12 already precompiled)     2 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions   [ FAIL 3 | WARN 0 | SKIP 4 | PASS 504 ]      ══ Skipped tests (4) ═══════════════════════════════════════════════════════════   • On CRAN (4): 'test.R:74:4', 'test.R:1074:4', 'test.R:1451:4', 'test.R:1492:4'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test.R:1011:4'): Starting and stopping Julia server ─────────────────   Error in `runJuliaServer(port, multiclient = TRUE)`: Timeout while waiting for response from Julia server   Backtrace:       ▆    1. └─JuliaConnectoR::startJuliaServer() at test.R:1011:4    2. └─JuliaConnectoR:::runJuliaServer(port, multiclient = TRUE)   ── Error ('test.R:1050:33'): Julia startup options can be modified ─────────────   Error in `runJuliaServer(multiclient = FALSE)`: Timeout while waiting for response from Julia server   Backtrace:        ▆     1. ├─testthat::expect_match(...) at test.R:1050:4     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. ├─utils::capture.output(...)     5. │ └─base::withVisible(...elt(i))     6. └─JuliaConnectoR::juliaEval("import Pkg; Pkg.status()") at test.R:1050:33     7. └─JuliaConnectoR:::ensureJuliaConnection()     8. └─JuliaConnectoR:::startJulia()     9. └─JuliaConnectoR:::juliaConnection()    10. └─JuliaConnectoR:::runJuliaServer(multiclient = FALSE)   ── Error ('test.R:1108:4'): Error if Julia is not setup properly ───────────────   Error in `runJuliaServer(multiclient = FALSE)`: Timeout while waiting for response from Julia server   Backtrace:       ▆    1. ├─testthat::expect_equal(1, juliaEval("1")) at test.R:1108:4    2. │ └─testthat::quasi_label(enquo(expected), expected.label, arg = "expected")    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─JuliaConnectoR::juliaEval("1")    5. └─JuliaConnectoR:::ensureJuliaConnection()    6. └─JuliaConnectoR:::startJulia()    7. └─JuliaConnectoR:::juliaConnection()    8. └─JuliaConnectoR:::runJuliaServer(multiclient = FALSE)      [ FAIL 3 | WARN 0 | SKIP 4 | PASS 504 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [10s/19s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs