* installing *source* package ‘JLPM’ ...
** this is package ‘JLPM’ version ‘1.0.4’
** package ‘JLPM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
using Fortran compiler: ‘GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/JLPM/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c runiran.c -o runiran.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c compute.f90 -o compute.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c loglik.f90 -o loglik.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c reconddensity.f90 -o reconddensity.o
reconddensity.f90:1097:44:
1097 | conddensity = conddensity + surv0_glob
| ^
Warning: ‘surv0_glob’ may be used uninitialized [-Wmaybe-uninitialized]
reconddensity.f90:507:21:
507 | double precision::surv0_glob,surv_glob,fevt,easurv
| ^~~~~~~~~~
note: ‘surv0_glob’ was declared here
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o JLPM.so init.o runiran.o compute.o loglik.o reconddensity.o -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/JLPM/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/JLPM/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/JLPM/src'
installing to /data/gannet/ripley/R/packages/tests-devel/JLPM.Rcheck/00LOCK-JLPM/00new/JLPM/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (JLPM)