* installing *source* package ‘JFM’ ...
** package ‘JFM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/JFM/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c wildfire_mesh.cpp -o wildfire_mesh.o
wildfire_mesh.cpp: In function 'arma::mat Rcpp_wildfire_search(double, arma::mat, arma::mat)':
wildfire_mesh.cpp:133:12: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
133 | while (r < nrow_norm) {
| ~~^~~~~~~~~~~
wildfire_mesh.cpp:280:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
280 | for (unsigned int i=0; i< nrow_norm;i++){
| ~^~~~~~~~~~~
wildfire_mesh.cpp: In function 'std::vector<double> compute_triangle_area_rcpp(arma::mat)':
wildfire_mesh.cpp:315:28: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
315 | for (unsigned int i=0; i < nrow_coord; i++) {
| ~~^~~~~~~~~~~~
wildfire_mesh.cpp: In function 'std::vector<double> compute_plane_area_rcpp(arma::mat, std::vector<int, std::allocator<int> >)':
wildfire_mesh.cpp:371:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
371 | for (unsigned int i=0; i < nrow_coord; i++) {
| ~~^~~~~~~~~~~~
wildfire_mesh.cpp: In function 'Rcpp::NumericVector least_square_plane_rcpp(Rcpp::NumericMatrix)':
wildfire_mesh.cpp:495:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
495 | for (unsigned int i = 0; i < nrow_Points; i++) {
| ~~^~~~~~~~~~~~~
wildfire_mesh.cpp: In function 'std::vector<int, std::allocator<int> > find_triangles_rcpp(Rcpp::NumericMatrix, int)':
wildfire_mesh.cpp:555:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
555 | for (unsigned int i=0; i<l1.size()-1; i++)
| ^~~
wildfire_mesh.cpp:566:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
566 | temp[j++] = l1[l1.size()-1];
| ^~~~
wildfire_mesh.cpp:571:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
571 | for (int i=0; i<j; i++)
| ^~~
wildfire_mesh.cpp:574:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
574 | return l1;
| ^~~~~~
wildfire_mesh.cpp: In function 'Rcpp::NumericMatrix find_neighbours_rcpp(Rcpp::NumericMatrix)':
wildfire_mesh.cpp:596:29: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
596 | for (unsigned int r = 0; r< num_rows; r++) {
| ~^~~~~~~~~~
wildfire_mesh.cpp:619:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
619 | for (unsigned int i=0; i<l1.size()-1; i++)
| ^~~
wildfire_mesh.cpp:630:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
630 | temp[j++] = l1[l1.size()-1];
| ^~~~
wildfire_mesh.cpp:636:20: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} and 'unsigned int' [-Wsign-compare]
636 | if (temp[i]!=r) neighbours_v.push_back(temp[i]);
wildfire_mesh.cpp: In function 'arma::mat compute_plane_normal(arma::mat, arma::mat, std::vector<int, std::allocator<int> >)':
wildfire_mesh.cpp:740:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
740 | for (unsigned int i=0; i < nrow_it; i++) {
| ~~^~~~~~~~~
wildfire_mesh.cpp: In function 'Rcpp::NumericMatrix test_rcpp(arma::mat, arma::mat, std::vector<int, std::allocator<int> >)':
wildfire_mesh.cpp:865:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
865 | for (unsigned int i=0; i < nrow_it; i++) {
| ~~^~~~~~~~~
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o JFM.so RcppExports.o wildfire_mesh.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/JFM/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/JFM/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/JFM/src'
installing to /data/gannet/ripley/R/packages/tests-devel/JFM.Rcheck/00LOCK-JFM/00new/JFM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (JFM)