* installing *source* package ‘IntegMultiReg’ ...
** this is package ‘IntegMultiReg’ version ‘0.1.0’
** package ‘IntegMultiReg’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gsl-config... /usr/sbin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/IntegMultiReg/src'
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c initial.c -o initial.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c log_lik_non_local.c -o log_lik_non_local.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c log_posterior.c -o log_posterior.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c main_function_final.c -o main_function_final.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c main_prediction.c -o main_prediction.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c main_prediction_test.c -o main_prediction_test.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c prediction_cv.c -o prediction_cv.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sample_gam.c -o sample_gam.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sample_latent_binary_outcome.c -o sample_latent_binary_outcome.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sample_theta.c -o sample_theta.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c truncate.c -o truncate.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c utils.c -o utils.o
prediction_cv.c: In function ‘predict_cv_fold’:
prediction_cv.c:252:12: warning: ‘probtest’ may be used uninitialized [-Wmaybe-uninitialized]
252 | return probtest;
| ^~~~~~~~
prediction_cv.c:201:11: note: ‘probtest’ was declared here
201 | double *probtest;
| ^~~~~~~~
main_prediction.c: In function ‘main_function_prediction’:
main_prediction.c:227:20: warning: ‘ytotalb’ may be used uninitialized [-Wmaybe-uninitialized]
227 | _Bool *ytotalb;
| ^~~~~~~
main_prediction.c:262:35: warning: ‘ytestb’ may be used uninitialized [-Wmaybe-uninitialized]
262 | ytestb[i] = (_Bool)YY[m][test_index[i]][0];
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_prediction.c:239:24: note: ‘ytestb’ was declared here
239 | _Bool *ytestb;
| ^~~~~~
main_prediction.c:266:34: warning: ‘ytest’ may be used uninitialized [-Wmaybe-uninitialized]
266 | ytest[i] = YY[m][test_index[i]][0];
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
main_prediction.c:240:25: note: ‘ytest’ was declared here
240 | double *ytest;
| ^~~~~
main_function_final.c: In function ‘main_function’:
main_function_final.c:209:21: warning: ‘yobs’ may be used uninitialized [-Wmaybe-uninitialized]
209 | yobs[i] = dvector(0, sample_size_ptr[i] - 1);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_function_final.c:193:14: note: ‘yobs’ was declared here
193 | double **yobs;
| ^~~~
main_function_final.c:211:22: warning: ‘yobsb’ may be used uninitialized [-Wmaybe-uninitialized]
211 | yobsb[i] = (_Bool *)malloc(sample_size_ptr[i] * sizeof(_Bool));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
main_function_final.c:194:13: note: ‘yobsb’ was declared here
194 | _Bool **yobsb;
| ^~~~~
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o IntegMultiReg.so init.o initial.o log_lik_non_local.o log_posterior.o main_function_final.o main_prediction.o main_prediction_test.o prediction_cv.o sample_gam.o sample_latent_binary_outcome.o sample_theta.o truncate.o utils.o -lgsl -lgslcblas -lm
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/IntegMultiReg/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/IntegMultiReg/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/IntegMultiReg/src'
installing to /data/localhost/ripley/R/packages/tests-devel/IntegMultiReg.Rcheck/00LOCK-IntegMultiReg/00new/IntegMultiReg/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (IntegMultiReg)