* installing *source* package ‘HVS’ ...
** this is package ‘HVS’ version ‘1.0.0’
** package ‘HVS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/HVS/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c CountIndep.cpp -o CountIndep.o
CountIndep.cpp: In member function ‘double setgraph::indep_prob(const set&, set*)’:
CountIndep.cpp:239:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  239 |   for(j=temp->getfirst();j<set::maxcard&&temp->disjoint(edges[j]);temp->getnext(j));
      |   ^~~
CountIndep.cpp:240:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  240 |     if(j==set::maxcard){
      |     ^~
CountIndep.cpp: In function ‘void count_indep(double*, const int*, const double*, const double*)’:
CountIndep.cpp:693:18: warning: unused variable ‘sz’ [-Wunused-variable]
  693 |     unsigned int sz=*n;
      |                  ^~
CountIndep.cpp: In function ‘void count_indep_import(double*, const int*, const double*, const double*, const int*)’:
CountIndep.cpp:701:18: warning: unused variable ‘sz’ [-Wunused-variable]
  701 |     unsigned int sz=*n;
      |                  ^~
CountIndep.cpp: In member function ‘double graph::select_cutoff(double, unsigned int, unsigned int, double*, double*, double*, double*)’:
CountIndep.cpp:681:20: warning: ‘jj’ may be used uninitialized [-Wmaybe-uninitialized]
  681 |   double ans=cvals[jj];
      |                    ^~
CountIndep.cpp:580:16: note: ‘jj’ was declared here
  580 |   unsigned int jj;
      |                ^~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Hypergraph.cpp -o Hypergraph.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Set.cpp -o Set.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o HVS.so CountIndep.o Hypergraph.o Set.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/HVS/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/HVS/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/HVS/src'
installing to /data/gannet/ripley/R/packages/tests-devel/HVS.Rcheck/00LOCK-HVS/00new/HVS/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HVS)