* installing *source* package ‘HTT’ ...
** this is package ‘HTT’ version ‘0.1.2’
** package ‘HTT’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/HTT/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Convenience.cpp -o Convenience.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Permutation.cpp -o Permutation.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Splits.cpp -o Splits.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c TreeGrow.cpp -o TreeGrow.o
Splits.cpp: In function ‘Rcpp::List split_unordered_greedy(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::NumericMatrix, std::string, int, double)’:
Splits.cpp:340:30: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
340 | while (left_index.size() < m - 1)
| ~~~~~~~~~~~~~~~~~~^~~~~~~
Splits.cpp:376:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
376 | for (int i = 0; i < left_index.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
Splits.cpp:395:30: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
395 | while (left_index.size() < m - 1)
| ~~~~~~~~~~~~~~~~~~^~~~~~~
Splits.cpp:431:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
431 | for (int i = 0; i < left_index.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
Splits.cpp:448:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
448 | for (int i = 0; i < left_index.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/15/bits/stl_iterator.h:78,
from /usr/include/c++/15/bits/stl_algobase.h:67,
from /usr/include/c++/15/bits/specfun.h:43,
from /usr/include/c++/15/cmath:3913,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/platform/compiler.h:37,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/headers.h:67,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30,
from Convenience.h:1,
from Splits.cpp:4:
In function ‘constexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = int; _Args = {const int&}]’,
inlined from ‘static constexpr void std::allocator_traits<std::allocator<_Up> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]’ at /usr/include/c++/15/bits/alloc_traits.h:676:21,
inlined from ‘constexpr void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/vector.tcc:586:26,
inlined from ‘constexpr void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:1427:21,
inlined from ‘Rcpp::List split_unordered_greedy(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::NumericMatrix, std::string, int, double)’ at Splits.cpp:438:29:
/usr/include/c++/15/bits/stl_construct.h:110:16: warning: ‘bhat’ may be used uninitialized [-Wmaybe-uninitialized]
110 | return ::new(__loc) _Tp(std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Splits.cpp: In function ‘Rcpp::List split_unordered_greedy(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::NumericMatrix, std::string, int, double)’:
Splits.cpp:398:11: note: ‘bhat’ was declared here
398 | int bhat;
| ^~~~
In function ‘constexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = int; _Args = {const int&}]’,
inlined from ‘static constexpr void std::allocator_traits<std::allocator<_Up> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]’ at /usr/include/c++/15/bits/alloc_traits.h:676:21,
inlined from ‘constexpr void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/vector.tcc:586:26,
inlined from ‘constexpr void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:1427:21,
inlined from ‘Rcpp::List split_unordered_greedy(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::NumericMatrix, std::string, int, double)’ at Splits.cpp:383:29:
/usr/include/c++/15/bits/stl_construct.h:110:16: warning: ‘bhat’ may be used uninitialized [-Wmaybe-uninitialized]
110 | return ::new(__loc) _Tp(std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Splits.cpp: In function ‘Rcpp::List split_unordered_greedy(Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::NumericMatrix, std::string, int, double)’:
Splits.cpp:343:11: note: ‘bhat’ was declared here
343 | int bhat;
| ^~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o HTT.so Convenience.o Permutation.o RcppExports.o Splits.o TreeGrow.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/HTT/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/HTT/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/HTT/src'
installing to /data/gannet/ripley/R/packages/tests-devel/HTT.Rcheck/00LOCK-HTT/00new/HTT/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HTT)