Install log for 'GreedyEPL'

* installing *source* package ‘GreedyEPL’ ...
** package ‘GreedyEPL’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GreedyEPL/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c core_binder.cpp -o core_binder.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c core_minimise_epl.cpp -o core_minimise_epl.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c core_normalised_information_distance.cpp -o core_normalised_information_distance.o
core_minimise_epl.cpp: In instantiation of 'arma::vec MinimiseEpl(T*, unsigned int) [with T = variation_of_information; arma::vec = arma::Col<double>]':
core_minimise_epl.cpp:67:26:   required from here
core_minimise_epl.cpp:25:10: warning: variable 'tempo' set but not used [-Wunused-but-set-variable]
   25 |   double tempo;
      |          ^~~~~
core_minimise_epl.cpp: In instantiation of 'arma::vec MinimiseEpl(T*, unsigned int) [with T = binder; arma::vec = arma::Col<double>]':
core_minimise_epl.cpp:77:26:   required from here
core_minimise_epl.cpp:25:10: warning: variable 'tempo' set but not used [-Wunused-but-set-variable]
core_minimise_epl.cpp: In instantiation of 'arma::vec MinimiseEpl(T*, unsigned int) [with T = normalised_variation_of_information; arma::vec = arma::Col<double>]':
core_minimise_epl.cpp:87:26:   required from here
core_minimise_epl.cpp:25:10: warning: variable 'tempo' set but not used [-Wunused-but-set-variable]
core_minimise_epl.cpp: In instantiation of 'arma::vec MinimiseEpl(T*, unsigned int) [with T = normalised_information_distance; arma::vec = arma::Col<double>]':
core_minimise_epl.cpp:97:26:   required from here
core_minimise_epl.cpp:25:10: warning: variable 'tempo' set but not used [-Wunused-but-set-variable]
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c core_normalised_variation_of_information.cpp -o core_normalised_variation_of_information.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c core_sample_of_partitions.cpp -o core_sample_of_partitions.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c core_variation_of_information.cpp -o core_variation_of_information.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utils_collapse_labels.cpp -o utils_collapse_labels.o
core_sample_of_partitions.cpp: In member function 'void sample_of_partitions::EvaluateLosses()':
core_sample_of_partitions.cpp:111:23: warning: unused variable 'g' [-Wunused-variable]
  111 |   arma::vec::iterator g, h;
      |                       ^
core_sample_of_partitions.cpp:111:26: warning: unused variable 'h' [-Wunused-variable]
  111 |   arma::vec::iterator g, h;
      |                          ^
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utils_entropy.cpp -o utils_entropy.o
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o GreedyEPL.so RcppExports.o core_binder.o core_minimise_epl.o core_normalised_information_distance.o core_normalised_variation_of_information.o core_sample_of_partitions.o core_variation_of_information.o init.o utils_collapse_labels.o utils_entropy.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GreedyEPL/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GreedyEPL/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GreedyEPL/src'
installing to /data/gannet/ripley/R/packages/tests-devel/GreedyEPL.Rcheck/00LOCK-GreedyEPL/00new/GreedyEPL/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GreedyEPL)