* installing *source* package ‘GeoAdjust’ ...
** this is package ‘GeoAdjust’ version ‘2.0.1’
** package ‘GeoAdjust’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/GeoAdjust/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/TMB/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c GeoAdjust_init.cpp -o GeoAdjust_init.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/TMB/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c compute.cpp -o compute.o
In file included from /data/localhost/ripley/R/test-dev/TMB/include/TMB.hpp:235,
from compute.cpp:6:
compute.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<double>]’:
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:1312:6: required from here
1312 | F(); // Run through user template (modifies reportvector)
| ~^~
compute.cpp:100:17: warning: unused variable ‘num_s’ [-Wunused-variable]
100 | DATA_INTEGER( num_s );
| ^~~~~
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
compute.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = double]’:
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:2035:7: required from here
2035 | PROTECT( res = asSEXP( pf->operator()() ) );
| ~~~~~~~~~~~~~~^~
compute.cpp:100:17: warning: unused variable ‘num_s’ [-Wunused-variable]
100 | DATA_INTEGER( num_s );
| ^~~~~
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
compute.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<double> >]’:
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<double> >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:2116:26: required from here
2116 | y[0]=F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
compute.cpp:100:17: warning: unused variable ‘num_s’ [-Wunused-variable]
100 | DATA_INTEGER( num_s );
| ^~~~~
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
compute.cpp: In instantiation of ‘Type objective_function<Type>::operator()() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’:
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:917:29: required from ‘Type objective_function<Type>::evalUserTemplate() [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]’
917 | Type ans=this->operator()();
| ~~~~~~~~~~~~~~~^
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:2365:28: required from here
2365 | y[0] = F.evalUserTemplate();
| ~~~~~~~~~~~~~~~~~~^~
compute.cpp:100:17: warning: unused variable ‘num_s’ [-Wunused-variable]
100 | DATA_INTEGER( num_s );
| ^~~~~
/data/localhost/ripley/R/test-dev/TMB/include/tmb_core.hpp:261:32: note: in definition of macro ‘DATA_INTEGER’
261 | #define DATA_INTEGER(name) int name(CppAD::Integer(asVector<Type>( \
| ^~~~
In file included from /data/localhost/ripley/R/test-dev/TMB/include/cppad/local/ad_fun.hpp:602,
from /data/localhost/ripley/R/test-dev/TMB/include/cppad/cppad.hpp:86,
from /data/localhost/ripley/R/test-dev/TMB/include/TMB.hpp:125:
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector<struct_old_variable>&, size_t, size_t, const Base*, const CppAD::vector<long unsigned int>&, short unsigned int&) [with Base = CppAD::AD<double>]’:
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized]
782 | code = hash_code(
| ~~~~~~~~~^
783 | op ,
| ~~~~~~~~~~~~~~~~~~~~~
784 | new_arg ,
| ~~~~~~~~~~~~~~~~~~~~~
785 | npar ,
| ~~~~~~~~~~~~~~~~~~~~~
786 | par
| ~~~
787 | );
| ~
In file included from /data/localhost/ripley/R/test-dev/TMB/include/cppad/local/recorder.hpp:14,
from /data/localhost/ripley/R/test-dev/TMB/include/cppad/local/ad.hpp:22,
from /data/localhost/ripley/R/test-dev/TMB/include/cppad/cppad.hpp:78:
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = AD<double>]’ declared here
125 | unsigned short hash_code(
| ^~~~~~~~~
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here
715 | addr_t new_arg[2];
| ^~~~~~~
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector<struct_old_variable>&, size_t, size_t, const Base*, const CppAD::vector<long unsigned int>&, short unsigned int&) [with Base = double]’:
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized]
782 | code = hash_code(
| ~~~~~~~~~^
783 | op ,
| ~~~~~~~~~~~~~~~~~~~~~
784 | new_arg ,
| ~~~~~~~~~~~~~~~~~~~~~
785 | npar ,
| ~~~~~~~~~~~~~~~~~~~~~
786 | par
| ~~~
787 | );
| ~
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = double]’ declared here
125 | unsigned short hash_code(
| ^~~~~~~~~
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here
715 | addr_t new_arg[2];
| ^~~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o GeoAdjust.so GeoAdjust_init.o compute.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/GeoAdjust/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/GeoAdjust/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/GeoAdjust/src'
installing to /data/localhost/ripley/R/packages/tests-devel/GeoAdjust.Rcheck/00LOCK-GeoAdjust/00new/GeoAdjust/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeoAdjust)