* installing *source* package ‘GPTCM’ ... ** this is package ‘GPTCM’ version ‘1.1.2’ ** package ‘GPTCM’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++17 accepts -g... yes checking for g++ -std=gnu++17 option to enable C++11 features... none needed checking whether CXX supports -std=c++17... yes checking for g++ -std=gnu++17 option to support OpenMP... -fopenmp checking whether OpenMP will actually work in a package... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ using C++17 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GPTCM/src' g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c BVS.cpp -o BVS.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c arms.cpp -o arms.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c arms_gibbs.cpp -o arms_gibbs.o arms_gibbs.cpp: In static member function ‘static void ARMS_Gibbs::arms_gibbs_xi(armsParmClass, arma::vec&, double, double, arma::mat, arma::mat, const DataClass&)’: arms_gibbs.cpp:47:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 47 | for (unsigned int i = 0; i < armsPar.ninit; ++i) | ~~^~~~~~~~~~~~~~~ arms_gibbs.cpp: In static member function ‘static void ARMS_Gibbs::arms_gibbs_beta(armsParmClass, arma::mat&, arma::vec&, double&, double, double, double, double, arma::umat, double, arma::vec&, arma::mat, arma::mat&, arma::mat, const DataClass&, double&)’: arms_gibbs.cpp:221:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 221 | for (unsigned int i = 0; i < armsPar.ninit; ++i) | ~~^~~~~~~~~~~~~~~ arms_gibbs.cpp: In static member function ‘static void ARMS_Gibbs::arms_gibbs_betaK(unsigned int, armsParmClass, arma::mat&, double, double, double, double, arma::umat, double, arma::vec&, arma::mat, arma::mat&, arma::mat, const DataClass&, double&)’: arms_gibbs.cpp:393:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 393 | for (unsigned int i = 0; i < armsPar.ninit; ++i) | ~~^~~~~~~~~~~~~~~ arms_gibbs.cpp: In static member function ‘static void ARMS_Gibbs::arms_gibbs_zeta(armsParmClass, arma::mat&, double&, arma::vec&, double, double, double, double, arma::umat, double, bool, arma::vec&, arma::mat, arma::mat, const DataClass&, double&)’: arms_gibbs.cpp:535:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 535 | for (unsigned int i = 0; i < armsPar.ninit; ++i) | ~~^~~~~~~~~~~~~~~ arms_gibbs.cpp: In static member function ‘static void ARMS_Gibbs::arms_gibbs_zetaK(unsigned int, armsParmClass, arma::mat&, double, double, double, double, arma::umat, double, bool, arma::vec&, arma::mat, arma::mat, const DataClass&, double&)’: arms_gibbs.cpp:691:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 691 | for (unsigned int i = 0; i < armsPar.ninit; ++i) | ~~^~~~~~~~~~~~~~~ arms_gibbs.cpp: In static member function ‘static void ARMS_Gibbs::arms_kappa(armsParmClass, double&, double, double, bool, arma::vec, arma::mat, arma::mat, const DataClass&)’: arms_gibbs.cpp:807:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 807 | for (unsigned int i = 0; i < armsPar.ninit; ++i) | ~~^~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c drive.cpp -o drive.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c eval_func.cpp -o eval_func.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c simple_gibbs.cpp -o simple_gibbs.o g++ -std=gnu++17 -shared -L/usr/local/lib64 -o GPTCM.so BVS.o RcppExports.o arms.o arms_gibbs.o drive.o eval_func.o init.o simple_gibbs.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GPTCM/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GPTCM/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GPTCM/src' installing to /data/gannet/ripley/R/packages/tests-devel/GPTCM.Rcheck/00LOCK-GPTCM/00new/GPTCM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GPTCM)