• using R Under development (unstable) (2026-01-02 r89267)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘GPCERF/DESCRIPTION’ ... OK
• this is package ‘GPCERF’ version ‘0.2.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘GPCERF’ can be installed ... [50s/90s] OK See the install log for details.
• used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [6s/10s] OK
• checking whether the package can be loaded with stated dependencies ... [6s/13s] OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/10s] OK
• checking whether the namespace can be unloaded cleanly ... [7s/16s] OK
• checking loading without being on the library search path ... [6s/13s] OK
• checking whether startup messages can be suppressed ... [7s/13s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [32s/52s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/10s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [142s/347s] ERROR   Running ‘testthat.R’ [142s/346s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(GPCERF)   >   > test_check("GPCERF")   2026-01-03 08:34:06.73367 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   Loading required package: nnls   Saving _problems/test-compute_deriv_nn-21.R   2026-01-03 08:34:20.269132 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_deriv_weights_gp-17.R   2026-01-03 08:34:30.62967 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_m_sigma-32.R   2026-01-03 08:34:47.635888 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:34:57.988268 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:35:08.016407 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=1195763 on localhost:11437 at 08:35:08.561   2026-01-03 08:35:17.350611 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.33399999999999 s.   2026-01-03 08:35:17.547488 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:35:26.491516 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:35:35.733676 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_weight_gp-49.R   2026-01-03 08:35:46.098705 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:35:55.270946 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:36:02.375742 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:36:08.468615 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:36:08.515654 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:36:18.895044 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:36:18.951343 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:36:19.008601 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:36:19.119817 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:36:19.189037 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:36:19.246526 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:36:19.309588 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:36:19.387205 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:36:30.648525 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   starting worker pid=1204902 on localhost:11437 at 08:36:31.437   starting worker pid=1204903 on localhost:11437 at 08:36:31.474   2026-01-03 08:36:56.776655 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:37:09.87984 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:37:09.964198 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 08:37:10.011706 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=1214291 on localhost:11437 at 08:37:10.686   2026-01-03 08:37:22.126932 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 12.103 s.} ...   2026-01-03 08:37:22.135026 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=1215630 on localhost:11437 at 08:37:22.953   2026-01-03 08:37:34.873498 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.739 s.   2026-01-03 08:37:34.878176 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=1217201 on localhost:11437 at 08:37:35.401   2026-01-03 08:37:49.107587 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 14.23 s.   2026-01-03 08:37:49.115177 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 39.151 s.   2026-01-03 08:37:49.131002 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:37:49.155499 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 08:37:49.20553 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:37:49.229289 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 08:37:49.339863 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:37:49.363846 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 08:37:49.414392 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:37:56.6043 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:37:56.633393 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 08:37:56.68298 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24   2026-01-03 08:37:56.71309 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 08:37:56.833935 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-estimate_gps-15.R   2026-01-03 08:38:07.282704 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:38:18.375271 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=1221451 on localhost:11437 at 08:38:19.028   2026-01-03 08:38:30.977238 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.601 s.   2026-01-03 08:38:30.981696 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=1223815 on localhost:11437 at 08:38:31.976   2026-01-03 08:38:44.627997 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 13.646 s.   Saving _problems/test-estimate_mean_sd_nn-37.R   2026-01-03 08:38:44.84637 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:38:53.749221 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:39:04.146436 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=1228863 on localhost:11437 at 08:39:04.873   2026-01-03 08:39:17.105902 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.959 s.   2026-01-03 08:39:17.167503 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 08:39:28.738544 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=1232048 on localhost:11437 at 08:39:29.330   2026-01-03 08:39:40.705118 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 11.963 s.} ...   [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──   Expected `deriv_val[1, 1]` to equal 1.558466.   Differences:     `actual`: -1.0   `expected`: 1.6      ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──   Expected `weights[37]` to equal 3.307249e-05.   Differences:     `actual`: -0.00011   `expected`: 0.00003      ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──   Expected `gp_cerf[10]` to equal 2.105425.   Differences:     `actual`: -6.1   `expected`: 2.1      ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────   Expected `weight$weight[28]` to equal 0.0002182767.   Differences:     `actual`: 0.00000   `expected`: 0.00022      ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────   Expected `gps_m$gps[4, 1]` to equal 8.74310154.   Differences:     `actual`: 7.3   `expected`: 8.7      ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──   Expected `val[10]` to equal 5.031225.   Differences:     `actual`: 5.067   `expected`: 5.031         [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [153s/369s] OK
• checking PDF version of manual ... [8s/14s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR