* installing *source* package ‘GNE’ ...
** this is package ‘GNE’ version ‘0.99-6’
** package ‘GNE’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GNE/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c SSR.c -o SSR.o
In file included from /data/gannet/ripley/R/R-devel/include/Rdefines.h:41,
                 from SSR.h:16,
                 from SSR.c:19:
SSR.c: In function ‘dofunSSR’:
/data/gannet/ripley/R/R-devel/include/Rinternals.h:934:33: warning: ‘R_grjointcall’ may be used uninitialized [-Wmaybe-uninitialized]
  934 | #define eval                    Rf_eval
/data/gannet/ripley/R/R-devel/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
SSR.c:207:31: note: in expansion of macro ‘eval’
  207 |         PROTECT(grjoint_res = eval(R_grjointcall, env)); //Grad_{x_ij} h(x)
      |                               ^~~~
SSR.c:80:8: note: ‘R_grjointcall’ was declared here
   80 |   SEXP R_grjointcall, grjoint_res; //gradient of the joint function
      |        ^~~~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:934:33: warning: ‘R_jointcall’ may be used uninitialized [-Wmaybe-uninitialized]
  934 | #define eval                    Rf_eval
/data/gannet/ripley/R/R-devel/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
SSR.c:250:25: note: in expansion of macro ‘eval’
  250 |     PROTECT(joint_res = eval(R_jointcall, env)); //h(x)
      |                         ^~~~
SSR.c:79:8: note: ‘R_jointcall’ was declared here
   79 |   SEXP R_jointcall, joint_res; //the joint function
      |        ^~~~~~~~~~~
SSR.c: In function ‘dojacSSR’:
/data/gannet/ripley/R/R-devel/include/Rinternals.h:934:33: warning: ‘R_grconstrcall’ may be used uninitialized [-Wmaybe-uninitialized]
  934 | #define eval                    Rf_eval
/data/gannet/ripley/R/R-devel/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
SSR.c:591:32: note: in expansion of macro ‘eval’
  591 |         PROTECT(grconstr_res = eval(R_grconstrcall, env)); //Grad_{x_lj} g_l(x)
      |                                ^~~~
SSR.c:376:8: note: ‘R_grconstrcall’ was declared here
  376 |   SEXP R_grconstrcall, grconstr_res; //gradient of constr func
      |        ^~~~~~~~~~~~~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:934:33: warning: ‘R_grjointcall’ may be used uninitialized [-Wmaybe-uninitialized]
  934 | #define eval                    Rf_eval
/data/gannet/ripley/R/R-devel/include/Rinternals.h:388:36: note: in definition of macro ‘PROTECT’
  388 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
SSR.c:567:31: note: in expansion of macro ‘eval’
  567 |         PROTECT(grjoint_res = eval(R_grjointcall, env)); //Grad_{x_li} h(x)
      |                               ^~~~
SSR.c:379:8: note: ‘R_grjointcall’ was declared here
  379 |   SEXP R_grjointcall, grjoint_res; //gradient of joint func
      |        ^~~~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o GNE.so SSR.o init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GNE/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GNE/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GNE/src'
installing to /data/gannet/ripley/R/packages/tests-devel/GNE.Rcheck/00LOCK-GNE/00new/GNE/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GNE)