* installing *source* package ‘GFM’ ...
** package ‘GFM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GFM/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-DARMA_64BIT_WORD=1" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-DARMA_64BIT_WORD=1" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bgfm.cpp -o bgfm.o
bgfm.cpp: In function 'double calELBO(const arma::field<arma::Mat<double> >&, const arma::vec&, const arma::sp_mat&, const arma::mat&, const arma::mat&, const arma::vec&, const arma::mat&, const arma::rowvec&, const arma::mat&)':
bgfm.cpp:47:11: warning: unused variable 'logS' [-Wunused-variable]
   47 |   double  logS, entropy=0.0, ELBO=0.0;
      |           ^~~~
bgfm.cpp: In function 'void VB_Estep(const arma::field<arma::Mat<double> >&, const arma::sp_mat&, const arma::vec&, arma::mat&, arma::mat&, const arma::vec&, const arma::mat&, const arma::rowvec&, arma::mat&)':
bgfm.cpp:85:42: warning: unused variable 'q' [-Wunused-variable]
   85 |   int i,  d = Xf.n_elem, n=Xf(0).n_rows, q= B.n_cols, p;
      |                                          ^
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o GFM.so RcppExports.o bgfm.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GFM/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GFM/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GFM/src'
installing to /data/gannet/ripley/R/packages/tests-devel/GFM.Rcheck/00LOCK-GFM/00new/GFM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GFM)