* installing *source* package ‘GBOP2’ ...
** this is package ‘GBOP2’ version ‘0.1.4’
** package ‘GBOP2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GBOP2/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_WRAPPER -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Calculation2_original.cpp -o Calculation2_original.o
Calculation2_original.cpp:2:9: warning: ‘ARMA_DONT_USE_WRAPPER’ redefined
    2 | #define ARMA_DONT_USE_WRAPPER
      |         ^~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_WRAPPER -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Calculation_minimizeN_twolambda_update.cpp -o Calculation_minimizeN_twolambda_update.o
Calculation_minimizeN_twolambda_update.cpp:2:9: warning: ‘ARMA_DONT_USE_WRAPPER’ redefined
    2 | #define ARMA_DONT_USE_WRAPPER
      |         ^~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_WRAPPER -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Calculation_twoboundaries_jsm.cpp -o Calculation_twoboundaries_jsm.o
Calculation_twoboundaries_jsm.cpp:2:9: warning: ‘ARMA_DONT_USE_WRAPPER’ redefined
    2 | #define ARMA_DONT_USE_WRAPPER
      |         ^~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
Calculation_twoboundaries_jsm.cpp: In function ‘Result_dualE exacterror_recursive(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’:
Calculation_twoboundaries_jsm.cpp:148:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  148 |     for (int i = 0; i < nonstop_df.num_event.size(); i++) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Calculation_twoboundaries_jsm.cpp:171:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  171 |       for (int k = 0; k < newevent.size(); k++) {
      |                       ~~^~~~~~~~~~~~~~~~~
Calculation_twoboundaries_jsm.cpp:184:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |     for (int i = 0; i < nonstop_df.num_event.size(); i++) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Calculation_twoboundaries_jsm.cpp:207:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  207 |       for (int k = 0; k < newevent.size(); k++) {
      |                       ~~^~~~~~~~~~~~~~~~~
Calculation_twoboundaries_jsm.cpp:224:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  224 |     for (int i = 0; i < nonstop_df_new.num_event.size(); i++) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Calculation_twoboundaries_jsm.cpp:241:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for (int i = 0; i < nonstop_df.num_event.size(); i++) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Calculation_twoboundaries_jsm.cpp:264:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  264 |       for (int k = 0; k < newevent.size(); k++) {
      |                       ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -DARMA_DONT_USE_WRAPPER -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
GBOP2_types.h:5:9: warning: ‘ARMA_DONT_USE_WRAPPER’ redefined
    5 | #define ARMA_DONT_USE_WRAPPER
      |         ^~~~~~~~~~~~~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o GBOP2.so Calculation2_original.o Calculation_minimizeN_twolambda_update.o Calculation_twoboundaries_jsm.o RcppExports.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GBOP2/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/GBOP2/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/GBOP2/src'
installing to /data/gannet/ripley/R/packages/tests-devel/GBOP2.Rcheck/00LOCK-GBOP2/00new/GBOP2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GBOP2)