* installing *source* package ‘FRESHD’ ...
** package ‘FRESHD’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/FRESHD/src'
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rcppfunc.cpp -o rcppfunc.o
g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rcppfunc_mag.cpp -o rcppfunc_mag.o
In file included from auxfunc.h:20,
                 from rcppfunc.cpp:1:
qprog/eiquadprog.h: In instantiation of 'double Eigen::solve_quadprog2(LLT<Matrix<double, -1, -1>, 1>&, double, MatrixBase<Derived>&, const MatrixBase<U>&, const MatrixBase<OtherDerived>&, const MatrixBase<tD>&, const MatrixBase<tE>&, MatrixBase<tF>&) [with tA = Matrix<double, -1, 1>; tB = Matrix<double, -1, -1>; tC = Matrix<double, -1, 1>; tD = Matrix<double, -1, -1>; tE = Matrix<double, -1, 1>; tF = Matrix<double, -1, 1>]':
qprog/eiquadprog.h:154:25:   required from 'double Eigen::solve_quadprog(MatrixBase<Derived>&, MatrixBase<U>&, const MatrixBase<OtherDerived>&, const MatrixBase<tD>&, const MatrixBase<tE>&, const MatrixBase<tF>&, MatrixBase<tG>&) [with tA = Matrix<double, -1, -1>; tB = Matrix<double, -1, 1>; tC = Matrix<double, -1, -1>; tD = Matrix<double, -1, 1>; tE = Matrix<double, -1, -1>; tF = Matrix<double, -1, 1>; tG = Matrix<double, -1, 1>]'
auxfunc.h:112:15:   required from here
qprog/eiquadprog.h:181:7: warning: variable 'q' set but not used [-Wunused-but-set-variable]
  181 |   int q;
      |       ^
auxfunc.h: In function 'arma::vec aradmm_estimate(int, double, double, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, double, double, double, double, double)':
auxfunc.h:215:19: warning: 'bb_h' may be used uninitialized [-Wmaybe-uninitialized]
  215 | double ss_h = sqrt(bb_h);
      |               ~~~~^~~~~~
auxfunc.h:180:8: note: 'bb_h' was declared here
  180 | double bb_h,bb_g;
      |        ^~~~
rcppfunc.cpp: In function 'Rcpp::List solveMMP(arma::mat, arma::mat, arma::mat, arma::mat, Rcpp::NumericVector, std::string, double, arma::vec, int, int, double, arma::mat, double, int, std::string, std::string, double, double, double, double, double, double, int, std::string, int, int, double, double, double)':
rcppfunc.cpp:91:10: warning: 'Lwave' may be used uninitialized [-Wmaybe-uninitialized]
   91 | tmp  = wt(Y.slice(j), dim, Lwave, h, g, J, p1, p2, p3, tmp);
      |        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rcppfunc.cpp:40:5: note: 'Lwave' was declared here
   40 | int Lwave;
      |     ^~~~~
rcppfunc.cpp:271:29: warning: 'min_eig' may be used uninitialized [-Wmaybe-uninitialized]
  271 | delta = (-2 * pow(delta, 2) * min_eig * eta
      |          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
rcppfunc.cpp:55:12: note: 'min_eig' was declared here
   55 | dres_norm, min_eig,//eta, //gamk,
      |            ^~~~~~~
rcppfunc.cpp:261:15: warning: 'delta' may be used uninitialized [-Wmaybe-uninitialized]
  261 | Xg = proxg_tos(Z, delta, -PhitY, eigen_Q, eigen_AE, eigen_ce, eigen_AI, eigen_ci,
      |      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  262 |                p1, p2, p3);
      |                ~~~~~~~~~~~
rcppfunc.cpp:54:8: note: 'delta' was declared here
   54 | double delta,
      |        ^~~~~
g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o FRESHD.so RcppExports.o rcppfunc.o rcppfunc_mag.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/FRESHD/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/FRESHD/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/FRESHD/src'
installing to /data/gannet/ripley/R/packages/tests-devel/FRESHD.Rcheck/00LOCK-FRESHD/00new/FRESHD/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FRESHD)