• using R Under development (unstable) (2025-03-15 r87978)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘FIESTA/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘FIESTA’ version ‘3.7.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘FIESTA’ can be installed ... [89s/91s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [189s/192s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [14s/15s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... OK   Running ‘testthat.R’
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [199s/204s] ERROR Error(s) in re-building vignettes: --- re-building ‘FIESTA_datSum_examples.Rmd’ using rmarkdown --- finished re-building ‘FIESTA_datSum_examples.Rmd’ --- re-building ‘FIESTA_manual_mod_est.Rmd’ using rmarkdown --- finished re-building ‘FIESTA_manual_mod_est.Rmd’ --- re-building ‘FIESTA_manual_mod_pop.Rmd’ using rmarkdown --- finished re-building ‘FIESTA_manual_mod_pop.Rmd’ --- re-building ‘FIESTA_tutorial_DB.Rmd’ using rmarkdown --- finished re-building ‘FIESTA_tutorial_DB.Rmd’ --- re-building ‘FIESTA_tutorial_GB.Rmd’ using rmarkdown Quitting from FIESTA_tutorial_GB.Rmd:293-308 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! x must be character or SQL --- Backtrace:      ▆   1. └─FIESTA::DBqryCSV(qry, states = "Wyoming", sqltables = "POP_STRATUM")   2. └─sqldf::sqldf(sql, stringsAsFactors = FALSE)   3. ├─DBI::dbWriteTable(connection, nam, DF, row.names = row.names)   4. └─RSQLite::dbWriteTable(connection, nam, DF, row.names = row.names)   5. └─RSQLite (local) .local(conn, name, value, ...)   6. ├─DBI::dbCreateTable(...)   7. └─DBI::dbCreateTable(...)   8. ├─DBI::sqlCreateTable(...)   9. └─DBI::sqlCreateTable(...)  10. ├─DBI::dbQuoteIdentifier(con, names(fields))  11. └─DBI::dbQuoteIdentifier(con, names(fields)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'FIESTA_tutorial_GB.Rmd' failed with diagnostics: x must be character or SQL --- failed re-building ‘FIESTA_tutorial_GB.Rmd’ --- re-building ‘FIESTA_tutorial_MA.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_MA_files/figure-html/unnamed-chunk-31-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3831 bytes Input file size = 4686 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3492   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3448   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3448 Output IDAT size = 3448 bytes (383 bytes decrease) Output file size = 3526 bytes (1160 bytes = 24.75% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_MA_files/figure-html/unnamed-chunk-32-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5720 bytes Input file size = 6578 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5305   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5252   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5252 Output IDAT size = 5252 bytes (468 bytes decrease) Output file size = 5330 bytes (1248 bytes = 18.97% decrease) --- finished re-building ‘FIESTA_tutorial_MA.Rmd’ --- re-building ‘FIESTA_tutorial_PB.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_PB_files/figure-html/unnamed-chunk-11-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26594 bytes Input file size = 26708 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19281   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19281 Output IDAT size = 19281 bytes (7313 bytes decrease) Output file size = 19359 bytes (7349 bytes = 27.52% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_PB_files/figure-html/unnamed-chunk-54-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7405 bytes Input file size = 8263 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6776   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6776 Output IDAT size = 6776 bytes (629 bytes decrease) Output file size = 6854 bytes (1409 bytes = 17.05% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_PB_files/figure-html/unnamed-chunk-67-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7232 bytes Input file size = 8090 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6557   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6511   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6511 Output IDAT size = 6511 bytes (721 bytes decrease) Output file size = 6589 bytes (1501 bytes = 18.55% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_PB_files/figure-html/unnamed-chunk-96-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18139 bytes Input file size = 18241 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12519   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12519 Output IDAT size = 12519 bytes (5620 bytes decrease) Output file size = 12597 bytes (5644 bytes = 30.94% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_PB_files/figure-html/unnamed-chunk-116-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5158 bytes Input file size = 6016 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4607   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4565   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4565 Output IDAT size = 4565 bytes (593 bytes decrease) Output file size = 4643 bytes (1373 bytes = 22.82% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_PB_files/figure-html/unnamed-chunk-117-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 6586 bytes Input file size = 7444 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6083   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6023   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6023 Output IDAT size = 6023 bytes (563 bytes decrease) Output file size = 6101 bytes (1343 bytes = 18.04% decrease) --- finished re-building ‘FIESTA_tutorial_PB.Rmd’ --- re-building ‘FIESTA_tutorial_SA.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_SA_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8679 bytes Input file size = 8769 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6823   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6823 Output IDAT size = 6823 bytes (1856 bytes decrease) Output file size = 6901 bytes (1868 bytes = 21.30% decrease) --- finished re-building ‘FIESTA_tutorial_SA.Rmd’ --- re-building ‘FIESTA_tutorial_dat.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_dat_files/figure-html/unnamed-chunk-37-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7649 bytes Input file size = 8507 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7203   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7203 Output IDAT size = 7203 bytes (446 bytes decrease) Output file size = 7281 bytes (1226 bytes = 14.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_dat_files/figure-html/unnamed-chunk-37-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7649 bytes Input file size = 8507 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7203   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7203 Output IDAT size = 7203 bytes (446 bytes decrease) Output file size = 7281 bytes (1226 bytes = 14.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_dat_files/figure-html/unnamed-chunk-38-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7649 bytes Input file size = 8507 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7203   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7203 Output IDAT size = 7203 bytes (446 bytes decrease) Output file size = 7281 bytes (1226 bytes = 14.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_dat_files/figure-html/unnamed-chunk-38-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7649 bytes Input file size = 8507 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7203   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7203 Output IDAT size = 7203 bytes (446 bytes decrease) Output file size = 7281 bytes (1226 bytes = 14.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_dat_files/figure-html/unnamed-chunk-40-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4695 bytes Input file size = 5553 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4247   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4188   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4188 Output IDAT size = 4188 bytes (507 bytes decrease) Output file size = 4266 bytes (1287 bytes = 23.18% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/FIESTA.Rcheck/vign_test/FIESTA/vignettes/FIESTA_tutorial_dat_files/figure-html/unnamed-chunk-40-2.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4695 bytes Input file size = 5553 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4247   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4188   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4188 Output IDAT size = 4188 bytes (507 bytes decrease) Output file size = 4266 bytes (1287 bytes = 23.18% decrease) --- finished re-building ‘FIESTA_tutorial_dat.Rmd’ --- re-building ‘FIESTA_tutorial_sp.Rmd’ using rmarkdown --- finished re-building ‘FIESTA_tutorial_sp.Rmd’ SUMMARY: processing the following file failed:   ‘FIESTA_tutorial_GB.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [21s/21s] OK
• checking HTML version of manual ... [11s/12s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR