* installing *source* package ‘ELAplus’ ...
** this is package ‘ELAplus’ version ‘1.0.2’
** package ‘ELAplus’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/ELAplus/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ELA_functions.cpp -o ELA_functions.o
ELA_functions.cpp: In function ‘arma::mat SA(const arma::mat&, const double&, const int&, bool, bool, const double&, const int&, const double&, const double&)’:
ELA_functions.cpp:129:7: warning: unused variable ‘total_tt’ [-Wunused-variable]
  129 |   int total_tt = 0;
      |       ^~~~~~~~
ELA_functions.cpp:132:10: warning: unused variable ‘minu’ [-Wunused-variable]
  132 |   double minu = std::numeric_limits<double>::infinity();
      |          ^~~~
ELA_functions.cpp:150:10: warning: unused variable ‘upd’ [-Wunused-variable]
  150 |   double upd;
      |          ^~~
ELA_functions.cpp: In function ‘arma::mat fullSA(const arma::mat&, const arma::mat&, bool, bool, const double&, const int&, const double&, const int&, const double&, const double&)’:
ELA_functions.cpp:333:10: warning: unused variable ‘minu’ [-Wunused-variable]
  333 |   double minu = std::numeric_limits<double>::infinity();
      |          ^~~~
ELA_functions.cpp: In function ‘int convDec(arma::rowvec)’:
ELA_functions.cpp:697:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  697 |   for(int i=0; i< v.n_elem; i++){
      |                ~^~~~~~~~~~
ELA_functions.cpp: In function ‘std::string convStr(const arma::rowvec&)’:
ELA_functions.cpp:710:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  710 |   for(int i=0; i< v.n_elem; i++){
      |                ~^~~~~~~~~~
ELA_functions.cpp: In function ‘arma::mat SSentropy_cpp(arma::mat, arma::mat, arma::rowvec, arma::mat, int, int)’:
ELA_functions.cpp:758:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  758 |   for(int i=0; i < uoc.n_rows; i++){
      |                ~~^~~~~~~~~~~~
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
RcppExports.cpp:54:15: warning: inline function ‘double cEnergy(const arma::rowvec&, const arma::rowvec&, const arma::mat&)’ used but never defined
   54 | inline double cEnergy(const arma::rowvec& state, const arma::rowvec& alpha, const arma::mat& beta);
      |               ^~~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o ELAplus.so ELA_functions.o RcppExports.o -fopenmp -llapack -L/data/localhost/ripley/R/R-devel/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/ELAplus/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/ELAplus/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/ELAplus/src'
installing to /data/localhost/ripley/R/packages/tests-devel/ELAplus.Rcheck/00LOCK-ELAplus/00new/ELAplus/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ELAplus)