* installing *source* package ‘ECOSolveR’ ...
** package ‘ECOSolveR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src'
(cp -f ecos-2954b2a-changes/include/* ecos/include && \
cp -f ecos-2954b2a-changes/ecos_bb/* ecos/ecos_bb && \
cp -f ecos-2954b2a-changes/Makefile ecos && \
cp -f ecos-2954b2a-changes/ecos-unix.mk ecos/ecos.mk && \
(cd ecos && \
make libecos.a CC="gcc-13" CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config" AR="gcc-ar" RANLIB="gcc-ranlib" && \
make libecos_bb.a CC="gcc-13" CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config" AR="gcc-ar" RANLIB="gcc-ranlib") && \
touch ecos.ts)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src/ecos'
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/ecos.c -o ecos.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/kkt.c -o kkt.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/cone.c -o cone.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/spla.c -o spla.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/ctrlc.c -o ctrlc.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/timer.c -o timer.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/preproc.c -o preproc.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/splamm.c -o splamm.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/equil.c -o equil.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/expcone.c -o expcone.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c src/wright_omega.c -o wright_omega.o
( cd external/ldl    ; make )
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src/ecos/external/ldl'
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -I../SuiteSparse_config -Iinclude -c src/ldl.c -o ldl.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -I../SuiteSparse_config -Iinclude -DLDL_LONG -c src/ldl.c -o ldll.o
gcc-ar rv  libldl.a ldl.o ldll.o
/usr/bin/ar: creating libldl.a
a - ldl.o
a - ldll.o
gcc-ranlib libldl.a
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src/ecos/external/ldl'
gcc-ar -x external/ldl/libldl.a
( cd external/amd    ; make )
make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src/ecos/external/amd'
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -c src/amd_global.c -o amd_global.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_aat.c -o amd_i_aat.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_1.c -o amd_i_1.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_2.c -o amd_i_2.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_dump.c -o amd_i_dump.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_postorder.c -o amd_i_postorder.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_post_tree.c -o amd_i_post_tree.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_defaults.c -o amd_i_defaults.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_order.c -o amd_i_order.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_control.c -o amd_i_control.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_info.c -o amd_i_info.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_valid.c -o amd_i_valid.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_preprocess.c -o amd_i_preprocess.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_aat.c -o amd_l_aat.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_1.c -o amd_l_1.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_2.c -o amd_l_2.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_dump.c -o amd_l_dump.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_postorder.c -o amd_l_postorder.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_post_tree.c -o amd_l_post_tree.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_defaults.c -o amd_l_defaults.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_order.c -o amd_l_order.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_control.c -o amd_l_control.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_info.c -o amd_l_info.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_valid.c -o amd_l_valid.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_preprocess.c -o amd_l_preprocess.o
gcc-ar rv libamd.a amd_global.o amd_i_aat.o amd_i_1.o amd_i_2.o amd_i_dump.o amd_i_postorder.o amd_i_post_tree.o amd_i_defaults.o amd_i_order.o amd_i_control.o amd_i_info.o amd_i_valid.o amd_i_preprocess.o amd_l_aat.o amd_l_1.o amd_l_2.o amd_l_dump.o amd_l_postorder.o amd_l_post_tree.o amd_l_defaults.o amd_l_order.o amd_l_control.o amd_l_info.o amd_l_valid.o amd_l_preprocess.o
/usr/bin/ar: creating libamd.a
a - amd_global.o
a - amd_i_aat.o
a - amd_i_1.o
a - amd_i_2.o
a - amd_i_dump.o
a - amd_i_postorder.o
a - amd_i_post_tree.o
a - amd_i_defaults.o
a - amd_i_order.o
a - amd_i_control.o
a - amd_i_info.o
a - amd_i_valid.o
a - amd_i_preprocess.o
a - amd_l_aat.o
a - amd_l_1.o
a - amd_l_2.o
a - amd_l_dump.o
a - amd_l_postorder.o
a - amd_l_post_tree.o
a - amd_l_defaults.o
a - amd_l_order.o
a - amd_l_control.o
a - amd_l_info.o
a - amd_l_valid.o
a - amd_l_preprocess.o
gcc-ranlib libamd.a
make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src/ecos/external/amd'
gcc-ar -x external/amd/libamd.a
gcc-ar rv libecos.a ecos.o kkt.o cone.o spla.o ctrlc.o timer.o preproc.o splamm.o equil.o expcone.o wright_omega.o ldll.o amd_l*.o amd_global.o
/usr/bin/ar: creating libecos.a
a - ecos.o
a - kkt.o
a - cone.o
a - spla.o
a - ctrlc.o
a - timer.o
a - preproc.o
a - splamm.o
a - equil.o
a - expcone.o
a - wright_omega.o
a - ldll.o
a - amd_l_1.o
a - amd_l_2.o
a - amd_l_aat.o
a - amd_l_control.o
a - amd_l_defaults.o
a - amd_l_dump.o
a - amd_l_info.o
a - amd_l_order.o
a - amd_l_post_tree.o
a - amd_l_postorder.o
a - amd_l_preprocess.o
a - amd_l_valid.o
a - amd_global.o
gcc-ranlib libecos.a
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src/ecos'
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src/ecos'
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c ecos_bb/ecos_bb_preproc.c -o ecos_bb_preproc.o
gcc-13 -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -DCTRLC=1 -DLDL_LONG -DDLONG -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config  -c ecos_bb/ecos_bb.c -o ecos_bb.o
gcc-ar rv libecos_bb.a ecos.o kkt.o cone.o spla.o ctrlc.o timer.o preproc.o splamm.o equil.o expcone.o wright_omega.o ecos_bb_preproc.o ecos_bb.o ldll.o amd_l_1.o amd_l_2.o amd_l_aat.o amd_l_control.o amd_l_defaults.o amd_l_dump.o amd_l_info.o amd_l_order.o amd_l_post_tree.o amd_l_postorder.o amd_l_preprocess.o amd_l_valid.o amd_global.o
/usr/bin/ar: creating libecos_bb.a
a - ecos.o
a - kkt.o
a - cone.o
a - spla.o
a - ctrlc.o
a - timer.o
a - preproc.o
a - splamm.o
a - equil.o
a - expcone.o
a - wright_omega.o
a - ecos_bb_preproc.o
a - ecos_bb.o
a - ldll.o
a - amd_l_1.o
a - amd_l_2.o
a - amd_l_aat.o
a - amd_l_control.o
a - amd_l_defaults.o
a - amd_l_dump.o
a - amd_l_info.o
a - amd_l_order.o
a - amd_l_post_tree.o
a - amd_l_postorder.o
a - amd_l_preprocess.o
a - amd_l_valid.o
a - amd_global.o
gcc-ranlib libecos_bb.a
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src/ecos'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c ecosolve.c -o ecosolve.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DCTRLC=1 -DLDL_LONG -DDLONG -I/data/gannet/ripley/R/R-devel/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c ecosolver_init.c -o ecosolver_init.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o ECOSolveR.so ecosolve.o ecosolver_init.o -Lecos -lecos -lecos_bb
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ECOSolveR/src'
installing to /data/gannet/ripley/R/packages/tests-devel/ECOSolveR.Rcheck/00LOCK-ECOSolveR/00new/ECOSolveR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ECOSolveR)