* installing *source* package ‘DySS’ ...
** this is package ‘DySS’ version ‘1.0’
** package ‘DySS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/DySS/src'
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_add_search_control_limit.cpp -o cpp_add_search_control_limit.o
cpp_add_search_control_limit.cpp: In function ‘double add_search_control_limit_impute(Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::IntegerVector, Rcpp::NumericVector, double, double, double, double, double, double)’:
cpp_add_search_control_limit.cpp:57:15: warning: variable ‘sumsignal’ set but not used [-Wunused-but-set-variable]
   57 |   int sumtime,sumsignal;
      |               ^~~~~~~~~
cpp_add_search_control_limit.cpp: In function ‘double add_search_control_limit_omit(Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::IntegerVector, Rcpp::NumericVector, double, double, double, double, double, double)’:
cpp_add_search_control_limit.cpp:44:10: warning: ‘limit’ may be used uninitialized [-Wmaybe-uninitialized]
   44 |   return limit;
      |          ^~~~~
cpp_add_search_control_limit.cpp:13:10: note: ‘limit’ was declared here
   13 |   double limit,ATS_actual=ATS_nominal-10000.0;
      |          ^~~~~
cpp_add_search_control_limit.cpp: In function ‘double add_search_control_limit_impute(Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::IntegerVector, Rcpp::NumericVector, double, double, double, double, double, double)’:
cpp_add_search_control_limit.cpp:87:10: warning: ‘limit’ may be used uninitialized [-Wmaybe-uninitialized]
   87 |   return limit;
      |          ^~~~~
cpp_add_search_control_limit.cpp:56:10: note: ‘limit’ was declared here
   56 |   double limit,ATS_actual;
      |          ^~~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_chart_CUSUM_univariate_dec.cpp -o cpp_chart_CUSUM_univariate_dec.o
cpp_chart_CUSUM_univariate_dec.cpp: In function ‘Rcpp::List chart_CUSUM_univariate_dec(arma::mat, arma::umat, arma::uvec, arma::mat, double, double)’:
cpp_chart_CUSUM_univariate_dec.cpp:52:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   52 |     for(jj=1;jj<nobs(ii);jj++){
      |              ~~^~~~~~~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_chart_CUSUM_univariate_sprint.cpp -o cpp_chart_CUSUM_univariate_sprint.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_chart_CUSUM_univariate_std.cpp -o cpp_chart_CUSUM_univariate_std.o
cpp_chart_CUSUM_univariate_sprint.cpp: In function ‘Rcpp::List chart_CUSUM_univariate_sprint(arma::mat, arma::umat, arma::uvec, arma::mat, double, double)’:
cpp_chart_CUSUM_univariate_sprint.cpp:39:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   39 |     for(jj=0;jj<nobs(ii);jj++){
      |              ~~^~~~~~~~~
cpp_chart_CUSUM_univariate_sprint.cpp:56:31: warning: ‘CCij’ may be used uninitialized [-Wmaybe-uninitialized]
   56 |         CCij=std::max(0.0,CCij+ee_vec(sl+1)-kk);
      |                           ~~~~^~~~~~~~~~~~~
cpp_chart_CUSUM_univariate_sprint.cpp:31:10: note: ‘CCij’ was declared here
   31 |   double CCij;
      |          ^~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_chart_EWMA_univariate_dec.cpp -o cpp_chart_EWMA_univariate_dec.o
cpp_chart_EWMA_univariate_dec.cpp: In function ‘Rcpp::List chart_EWMA_univariate_dec(arma::mat, arma::umat, arma::uvec, arma::mat, double, double)’:
cpp_chart_EWMA_univariate_dec.cpp:55:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   55 |     for(jj=1;jj<nobs(ii);jj++){
      |              ~~^~~~~~~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_chart_EWMA_univariate_sprint.cpp -o cpp_chart_EWMA_univariate_sprint.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_chart_EWMA_univariate_std.cpp -o cpp_chart_EWMA_univariate_std.o
cpp_chart_EWMA_univariate_sprint.cpp: In function ‘Rcpp::List chart_EWMA_univariate_sprint(arma::mat, arma::umat, arma::uvec, arma::mat, double, double)’:
cpp_chart_EWMA_univariate_sprint.cpp:39:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   39 |     for(jj=0;jj<nobs(ii);jj++){
      |              ~~^~~~~~~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_chart_risk.cpp -o cpp_chart_risk.o
cpp_chart_EWMA_univariate_sprint.cpp:56:59: warning: ‘EEij’ may be used uninitialized [-Wmaybe-uninitialized]
   56 |         EEij=std::max(0.0,lambda*ee_vec(sl+1)+(1.0-lambda)*EEij);
      |                                               ~~~~~~~~~~~~^~~~~
cpp_chart_EWMA_univariate_sprint.cpp:31:10: note: ‘EEij’ was declared here
   31 |   double EEij;
      |          ^~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_eva_calculate_ATS.cpp -o cpp_eva_calculate_ATS.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_eva_calculate_signal_times.cpp -o cpp_eva_calculate_signal_times.o
cpp_eva_calculate_ATS.cpp: In function ‘double eva_calculate_ATS_impute(Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::IntegerVector, Rcpp::NumericVector, double)’:
cpp_eva_calculate_ATS.cpp:42:15: warning: variable ‘sumsignal’ set but not used [-Wunused-but-set-variable]
   42 |   int sumtime,sumsignal;
      |               ^~~~~~~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_eva_four_elements.cpp -o cpp_eva_four_elements.o
cpp_eva_four_elements.cpp: In function ‘Rcpp::List eva_four_elements_omit(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::IntegerVector, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::IntegerVector, Rcpp::NumericVector)’:
cpp_eva_four_elements.cpp:31:27: warning: variable ‘signal’ set but not used [-Wunused-but-set-variable]
   31 |   int idx;double rho;bool signal;
      |                           ^~~~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_local_const_cov_est_faster.cpp -o cpp_local_const_cov_est_faster.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_local_const_mean_est_faster.cpp -o cpp_local_const_mean_est_faster.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_local_const_mean_est_update_faster.cpp -o cpp_local_const_mean_est_update_faster.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_local_const_percentile_est_faster.cpp -o cpp_local_const_percentile_est_faster.o
cpp_local_const_mean_est_update_faster.cpp: In function ‘arma::vec local_const_mean_est_update_faster(arma::mat, arma::imat, arma::ivec, arma::ivec, int, arma::mat)’:
cpp_local_const_mean_est_update_faster.cpp:24:10: warning: variable ‘tt_double’ set but not used [-Wunused-but-set-variable]
   24 |   double tt_double,ttdiff_double;
      |          ^~~~~~~~~
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_local_linear_cov_est_faster.cpp -o cpp_local_linear_cov_est_faster.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_local_linear_mean_est_faster.cpp -o cpp_local_linear_mean_est_faster.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_local_linear_mean_est_update_faster.cpp -o cpp_local_linear_mean_est_update_faster.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_mchart1_decorrelation_CUSUM_multivariate.cpp -o cpp_mchart1_decorrelation_CUSUM_multivariate.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_mchart1_decorrelation_EWMA_multivariate.cpp -o cpp_mchart1_decorrelation_EWMA_multivariate.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_mchart1_multivariate_CUSUM_multivariate.cpp -o cpp_mchart1_multivariate_CUSUM_multivariate.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_mchart1_multivariate_EWMA_multivariate.cpp -o cpp_mchart1_multivariate_EWMA_multivariate.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_risk_estimate_beta.cpp -o cpp_risk_estimate_beta.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_risk_estimate_beta_recurrent.cpp -o cpp_risk_estimate_beta_recurrent.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cpp_varcov_mat_est.cpp -o cpp_varcov_mat_est.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  f90_add.f90 -o f90_add.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  f90_addarray.f90 -o f90_addarray.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  f90_local_const_cov_est_mult.f90 -o f90_local_const_cov_est_mult.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  f90_local_const_mean_est_mult.f90 -o f90_local_const_mean_est_mult.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  f90_local_const_var_est_mult.f90 -o f90_local_const_var_est_mult.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  f90_mchart_simultaneous_cusum_both.f90 -o f90_mchart_simultaneous_cusum_both.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  f90_mchart_simultaneous_cusum_upward.f90 -o f90_mchart_simultaneous_cusum_upward.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  f90_mchart_simultaneous_ewma_both.f90 -o f90_mchart_simultaneous_ewma_both.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  f90_mchart_simultaneous_ewma_upward.f90 -o f90_mchart_simultaneous_ewma_upward.o
g++ -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c fortran_wrappers.cpp -o fortran_wrappers.o
g++ -std=gnu++11 -shared -L/usr/local/lib64 -o DySS.so RcppExports.o cpp_add_search_control_limit.o cpp_chart_CUSUM_univariate_dec.o cpp_chart_CUSUM_univariate_sprint.o cpp_chart_CUSUM_univariate_std.o cpp_chart_EWMA_univariate_dec.o cpp_chart_EWMA_univariate_sprint.o cpp_chart_EWMA_univariate_std.o cpp_chart_risk.o cpp_eva_calculate_ATS.o cpp_eva_calculate_signal_times.o cpp_eva_four_elements.o cpp_local_const_cov_est_faster.o cpp_local_const_mean_est_faster.o cpp_local_const_mean_est_update_faster.o cpp_local_const_percentile_est_faster.o cpp_local_linear_cov_est_faster.o cpp_local_linear_mean_est_faster.o cpp_local_linear_mean_est_update_faster.o cpp_mchart1_decorrelation_CUSUM_multivariate.o cpp_mchart1_decorrelation_EWMA_multivariate.o cpp_mchart1_multivariate_CUSUM_multivariate.o cpp_mchart1_multivariate_EWMA_multivariate.o cpp_risk_estimate_beta.o cpp_risk_estimate_beta_recurrent.o cpp_varcov_mat_est.o f90_add.o f90_addarray.o f90_local_const_cov_est_mult.o f90_local_const_mean_est_mult.o f90_local_const_var_est_mult.o f90_mchart_simultaneous_cusum_both.o f90_mchart_simultaneous_cusum_upward.o f90_mchart_simultaneous_ewma_both.o f90_mchart_simultaneous_ewma_upward.o fortran_wrappers.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/DySS/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/DySS/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/DySS/src'
installing to /data/gannet/ripley/R/packages/tests-devel/DySS.Rcheck/00LOCK-DySS/00new/DySS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DySS)